Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   GKS41_RS00575 Genome accession   NZ_CP047268
Coordinates   106923..108068 (+) Length   381 a.a.
NCBI ID   WP_159353554.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 101923..113068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS00555 - 102398..103114 (-) 717 WP_159353552.1 Crp/Fnr family transcriptional regulator -
  GKS41_RS00560 narK 103212..104402 (-) 1191 WP_159353553.1 nitrate transporter NarK -
  GKS41_RS00565 argS 104536..106206 (-) 1671 WP_014419127.1 arginine--tRNA ligase -
  GKS41_RS00570 - 106203..106631 (-) 429 WP_014419128.1 DUF1934 domain-containing protein -
  GKS41_RS00575 rapF 106923..108068 (+) 1146 WP_159353554.1 aspartate phosphatase Regulator
  GKS41_RS00580 - 108052..108171 (+) 120 WP_129091332.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  GKS41_RS00585 speB 108294..109166 (-) 873 WP_007614448.1 agmatinase -
  GKS41_RS00590 speE 109225..110055 (-) 831 WP_003151052.1 spermidine synthase -
  GKS41_RS00595 - 110255..112327 (+) 2073 WP_022553937.1 transglycosylase domain-containing protein -
  GKS41_RS00600 - 112352..112783 (-) 432 WP_022553938.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45712.19 Da        Isoelectric Point: 5.1522

>NTDB_id=411973 GKS41_RS00575 WP_159353554.1 106923..108068(+) (rapF) [Bacillus velezensis strain DH8043]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYAKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYFIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTLAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFAKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=411973 GKS41_RS00575 WP_159353554.1 106923..108068(+) (rapF) [Bacillus velezensis strain DH8043]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTACGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGATCAAGATCTACATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
CTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTCATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGTTGGCTGAAT
TAGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCAATAGCTGTTTTTGCAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACTCAGATTTATTTTAAGTTAGAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAGTATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

69.029

100

0.69
  rapC Bacillus subtilis subsp. subtilis str. 168

52.895

99.738

0.528

Multiple sequence alignment