Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N015_RS22635 Genome accession   NZ_CP047265
Coordinates   5078441..5079808 (-) Length   455 a.a.
NCBI ID   WP_024684987.1    Uniprot ID   A0AAU8LAD7
Organism   Pseudomonas asturiensis strain CC1524     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5073441..5084808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N015_RS22615 (N015_22615) yjiA 5074410..5075387 (-) 978 WP_024684990.1 GTPase -
  N015_RS22620 (N015_22620) - 5075483..5075680 (-) 198 WP_004884022.1 YbdD/YjiX family protein -
  N015_RS22625 (N015_22625) - 5075708..5077783 (-) 2076 WP_024684989.1 carbon starvation CstA family protein -
  N015_RS22630 (N015_22630) - 5078066..5078434 (+) 369 WP_024684988.1 PilZ domain-containing protein -
  N015_RS22635 (N015_22635) radA 5078441..5079808 (-) 1368 WP_024684987.1 DNA repair protein RadA Machinery gene
  N015_RS22640 (N015_22640) mscL 5080000..5080446 (+) 447 WP_024684986.1 large-conductance mechanosensitive channel protein MscL -
  N015_RS22645 (N015_22645) - 5080632..5081408 (-) 777 WP_024684985.1 ferredoxin--NADP reductase -
  N015_RS22650 (N015_22650) - 5081757..5081993 (+) 237 WP_080265948.1 helix-turn-helix domain-containing protein -
  N015_RS22655 (N015_22655) - 5082102..5083226 (+) 1125 WP_024684983.1 methyltransferase -
  N015_RS22660 (N015_22660) - 5083323..5083490 (-) 168 WP_032622535.1 DUF2474 domain-containing protein -
  N015_RS22665 (N015_22665) cydB 5083512..5084519 (-) 1008 WP_024684982.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48877.41 Da        Isoelectric Point: 6.8986

>NTDB_id=411931 N015_RS22635 WP_024684987.1 5078441..5079808(-) (radA) [Pseudomonas asturiensis strain CC1524]
MAKAKRLYGCTECGATFPKWAGQCSDCGAWNTLVETMIESGAAAAPSGRAGWTGAQAQIKTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIESIIA
TARVEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAFKHGFKRAIVPKANAPKEAPPGFQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=411931 N015_RS22635 WP_024684987.1 5078441..5079808(-) (radA) [Pseudomonas asturiensis strain CC1524]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACAGAATGCGGCGCGACGTTTCCCAAATGGGCGGGCCAGTGCAGCGACTG
CGGTGCCTGGAACACGCTCGTCGAGACCATGATCGAAAGTGGCGCGGCGGCTGCGCCAAGCGGGCGTGCAGGCTGGACCG
GCGCGCAAGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAGGAAATCCCTCGTTTTTCGACCAATTCCGCCGAGCTG
GACCGTGTGCTGGGCGGCGGTCTGGTGGACGGCTCTGTGGTGTTGATCGGCGGTGATCCCGGCATCGGCAAGTCCACGAT
CCTGCTGCAAACCCTGTGCAACATTGCGCAACGCATGCCTGCGCTGTACGTGACGGGCGAGGAGTCCCAGCAGCAGGTTG
CCATGCGCGCCCGTCGTTTGGGGCTGCCGCAGGACAAGCTGCGGGTCATGACCGAGACCTGTATCGAATCCATCATCGCC
ACGGCGCGGGTCGAGCAGCCCAAGGTGATGGTGATCGACTCCATCCAGACGATCTTCACCGAACAGCTGCAATCCGCGCC
GGGCGGCGTGGCACAGGTGCGTGAAAGCGCCGCGCTACTGGTGCGCTACGCCAAACAGAGTGGCACGGCCATCTTTCTGG
TCGGACACGTCACCAAGGAAGGCGCGCTGGCCGGACCTCGCGTGCTGGAGCACATGGTCGACACTGTGCTGTATTTCGAA
GGTGAGTCTGACGGCCGCCTGCGTCTGCTGCGCGCAGTGAAAAACCGCTTCGGCGCGGTGAACGAACTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAGGTCTCTAACCCGTCGGCGATCTTTCTTACTCGTGCCCAAGAAGAAGTGCCGGGCA
GTGTGGTCATGGCCACGTGGGAAGGTACGCGTCCCATGCTGGTCGAAGTCCAGGCGTTGGTGGATGACAGCCATATGTCC
AATCCACGTCGGGTCACGCTGGGTCTTGATCAGAATCGACTGGCGATGCTGTTGGCGGTTCTGCACCGGCACGGAGGCAT
TCCGACTCACGACCAGGACGTGTTTCTCAACGTGGTGGGCGGCGTGAAGGTGCTGGAAACGGCTTCCGACCTGGCGCTGA
TGGCAGCCGTCATGTCGAGCCTGCGCAATCGGCCGTTGCCCCATGACTTGCTGGTCTTCGGCGAGGTGGGCCTTTCAGGC
GAGGTGAGGCCGGTGCCCAGCGGGCAGGAGCGTCTTAAAGAGGCGTTCAAGCATGGTTTCAAGCGGGCCATCGTACCCAA
GGCCAATGCTCCGAAAGAAGCGCCTCCGGGGTTTCAGATCATTGCCGTGACCCGTCTTGAACAGGCGCTGGATGCACTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment