Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BCO26_RS09330 Genome accession   NC_015634
Coordinates   1855882..1858245 (-) Length   787 a.a.
NCBI ID   WP_013859781.1    Uniprot ID   -
Organism   Heyndrickxia coagulans 2-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1850882..1863245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCO26_RS09305 (BCO26_1823) - 1851224..1851874 (-) 651 WP_013859775.1 HlyD family efflux transporter periplasmic adaptor subunit -
  BCO26_RS09310 (BCO26_1824) - 1851882..1852322 (-) 441 WP_013859776.1 MarR family winged helix-turn-helix transcriptional regulator -
  BCO26_RS09315 (BCO26_1825) dtd 1852504..1852944 (-) 441 WP_013859777.1 D-aminoacyl-tRNA deacylase -
  BCO26_RS09320 (BCO26_1826) - 1852959..1855148 (-) 2190 WP_041819184.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  BCO26_RS09325 (BCO26_1828) - 1855370..1855891 (-) 522 WP_013859780.1 adenine phosphoribosyltransferase -
  BCO26_RS09330 (BCO26_1829) recJ 1855882..1858245 (-) 2364 WP_013859781.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BCO26_RS09335 (BCO26_1830) secDF 1858334..1860598 (-) 2265 WP_013859782.1 protein translocase subunit SecDF -
  BCO26_RS09340 (BCO26_1831) - 1860756..1861076 (-) 321 WP_017552647.1 post-transcriptional regulator -
  BCO26_RS09345 (BCO26_1832) spoVB 1861179..1862723 (+) 1545 WP_041819186.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87856.81 Da        Isoelectric Point: 5.9199

>NTDB_id=41193 BCO26_RS09330 WP_013859781.1 1855882..1858245(-) (recJ) [Heyndrickxia coagulans 2-6]
MLQSRTRWRVPETDPEAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGAEYHDPFLLHDMEKAAARIREAIKRE
EPVLVFGDYDADGVTSTAIMMAVLNDLGARAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVAREL
GIPLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEELAAIGTVADLVPLLDENRLI
AANGIKRLRTTKRPGLAALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHATPAAELLMTENAEEAGMLAETIDGLNKE
RQKIVNEMTNEAIEMVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVDELRRRLNEQAAALPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAYCPQIRAIGADGKHLKLALSKNGTTLDGVGFGLGNLTPHISPSACISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWVGHVPEDGQAFVVFQKETLRKLSLPDFSVRLVPVATMEEARAFDPANKNIVFLDLPPGPKM
MAALLEGGAPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKRHGDELAAYRGWSRNTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESFTYQKKLAQYQMEKDLLYSSFHELKMWFDRMIKPAVQYEEETAKWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=41193 BCO26_RS09330 WP_013859781.1 1855882..1858245(-) (recJ) [Heyndrickxia coagulans 2-6]
ATGCTGCAGTCAAGAACAAGGTGGCGGGTGCCGGAAACCGATCCGGAGGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGGCAGAATACCATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCCGCCCGTATCCGCGAAGCGATTAAAAGGGAA
GAGCCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGCACCGCGATCATGATGGCCGTTTTAAACGATCT
TGGCGCCCGTGCGGAATTTTATATCCCGGACCGGTTTAAAGAAGGGTACGGGCCAAATGAGGCGGCTTTCCGGCGGGCGG
CTGAAGAAGGATTCCAGCTGATCATTACCGTGGACACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCTCGCGAACTC
GGGATCCCGCTCATTATTACGGACCATCACGAACCCGGGCCGGTGTTGCCGGAAGCTTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TGCCGGAACAACTTGAAGAACTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTTCTGGATGAAAACCGGCTGATT
GCCGCAAACGGCATCAAACGGCTGAGAACAACAAAGCGGCCGGGGCTTGCGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATTAACGAAGAAACAATCGGCTTTGTGCTCGCCCCCCGTTTAAATGCGGCCGGGCGCCTGCAACATGCGACAC
CGGCAGCAGAACTGCTGATGACCGAAAACGCAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGGCTCAATAAAGAA
CGGCAAAAAATCGTAAACGAGATGACAAATGAAGCAATCGAAATGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGATGGAATGCCGGCGTAATCGGCATTGCCGCCTCGCGCCTTACAGAACGCTTTTACCGGCCTG
CGATTGTGCTCAGCTTTGATCCGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGTATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGATGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTGCCGGATGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCAGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGATGGGGCCTATTGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GGCGCTTTCCAAAAACGGCACAACGCTCGATGGAGTCGGCTTCGGGCTCGGAAATCTTACCCCGCATATTTCCCCTTCTG
CCTGCATATCGGTTGTCGGGGAACTGTCCATCAATGAATGGAATAATATCCGCAAGCCGCAAATGATGGTCAAGGACATC
AAAATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGTCGGGCACGTCCCGGAAGATGG
CCAGGCTTTTGTTGTGTTCCAAAAAGAAACATTGCGGAAACTGTCGCTGCCGGATTTTTCCGTCCGCCTTGTGCCGGTGG
CGACAATGGAAGAGGCAAGGGCATTTGACCCGGCAAATAAAAATATTGTGTTTCTTGATCTTCCGCCAGGCCCGAAGATG
ATGGCGGCACTGCTTGAAGGCGGTGCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTGAAGCGGCACGGGG
ATGAGCTGGCGGCTTACCGCGGCTGGTCGAGAAATACGATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTGAAAGCAGCCAAACAAAAACGCGATTTAAAGGAATCTTTTACGTATCAGAAAAA
ACTGGCACAATATCAAATGGAAAAGGACCTGCTGTACTCATCTTTCCATGAGCTGAAGATGTGGTTTGACCGAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

RecJ OB domain (RecJ_OB)

(454-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.113

100

0.531

Multiple sequence alignment