Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BCO26_RS08655 Genome accession   NC_015634
Coordinates   1729170..1730294 (-) Length   374 a.a.
NCBI ID   WP_013859647.1    Uniprot ID   -
Organism   Heyndrickxia coagulans 2-6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1724170..1735294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCO26_RS08615 (BCO26_1686) - 1724740..1725531 (+) 792 WP_013859638.1 YqhG family protein -
  BCO26_RS15605 - 1725565..1725741 (-) 177 WP_064485109.1 YqzE family protein -
  BCO26_RS08620 (BCO26_1687) - 1725728..1726285 (-) 558 WP_013859639.1 shikimate kinase -
  BCO26_RS08625 (BCO26_1688) comGG 1726282..1726650 (-) 369 WP_013859640.1 competence type IV pilus minor pilin ComGG -
  BCO26_RS08630 (BCO26_1689) comGF 1726647..1727129 (-) 483 WP_013859641.1 competence type IV pilus minor pilin ComGF -
  BCO26_RS08635 - 1727092..1727400 (-) 309 WP_017553561.1 type II secretion system protein -
  BCO26_RS08640 (BCO26_1692) comGD 1727387..1727830 (-) 444 WP_019720594.1 competence type IV pilus minor pilin ComGD -
  BCO26_RS08645 (BCO26_1693) comGC 1727827..1728138 (-) 312 WP_013859645.1 competence type IV pilus major pilin ComGC -
  BCO26_RS08650 (BCO26_1694) comGB 1728206..1729168 (-) 963 WP_013859646.1 competence type IV pilus assembly protein ComGB -
  BCO26_RS08655 (BCO26_1695) comGA 1729170..1730294 (-) 1125 WP_013859647.1 competence type IV pilus ATPase ComGA Machinery gene
  BCO26_RS08660 (BCO26_1696) - 1730489..1731196 (+) 708 WP_013859648.1 metalloregulator ArsR/SmtB family transcription factor -
  BCO26_RS08665 - 1731274..1731516 (+) 243 WP_014098019.1 DUF2626 domain-containing protein -
  BCO26_RS08670 (BCO26_1697) - 1731586..1732215 (-) 630 WP_013859649.1 MBL fold metallo-hydrolase -
  BCO26_RS15610 (BCO26_1698) - 1732345..1732518 (+) 174 WP_013859650.1 DUF2759 domain-containing protein -
  BCO26_RS08680 (BCO26_1699) - 1732617..1733585 (-) 969 WP_041819140.1 ROK family glucokinase -
  BCO26_RS08685 (BCO26_1700) - 1733578..1733799 (-) 222 WP_013859652.1 YqgQ family protein -
  BCO26_RS08695 (BCO26_1701) - 1734108..1735274 (-) 1167 WP_041819143.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 42378.89 Da        Isoelectric Point: 9.4407

>NTDB_id=41189 BCO26_RS08655 WP_013859647.1 1729170..1730294(-) (comGA) [Heyndrickxia coagulans 2-6]
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFAM
NVLQQTISLRISTLPTSLSKESLVIRILPHEEQFQLSQISLFPSSTKKLMALLNHSHGMLIFSGPTGSGKSTTMYTLVEH
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAVRASLTGHLVLTTLH
TRDAKGAIYRMMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDSQDCPRSREKRQTAVYELLYGKNLQRVLKEA
KGEQVYYHYPTLKEWLRKGIVLGYISEEEYHRWIAEEEEADKPQTAGALSYPGR

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=41189 BCO26_RS08655 WP_013859647.1 1729170..1730294(-) (comGA) [Heyndrickxia coagulans 2-6]
ATGTCAGTTGAAAAAATTGCGGAACTTTTGATCGGACAGGCGGTAAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAAAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTGAAATTTATGTCTTCCATGGATATCAGTGAAAAACGGAAACCCCAAAGCGGGTCGTTTGCCATG
AACGTTTTGCAGCAGACGATCTCCTTAAGGATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTCATCCGGAT
TTTGCCCCACGAAGAACAATTCCAGCTCAGCCAAATTTCACTTTTTCCATCGAGCACGAAAAAATTAATGGCGCTATTAA
ACCATTCGCACGGCATGCTGATTTTCAGCGGTCCGACCGGAAGCGGCAAGTCGACGACGATGTATACGCTTGTTGAGCAC
TGCGCAAAACGGTTTTTACGGAATGTAATTACACTGGAAGACCCTGTTGAAAAACAAAGCGATTCGTTTTTGCAGGTGCA
GGTGAATGAAAAAGCAGGCATTACTTATAGCACAGGGCTGAAAGCAATTTTGCGCCATGATCCGGATATTATCCTGGTGG
GGGAAATCCGCGATGCCGAAACAGCAAGAATTGCGGTCCGCGCATCGCTCACCGGCCATCTCGTGCTGACGACATTGCAT
ACGCGTGACGCAAAGGGCGCGATCTACAGGATGATGGAATTCGGCGTGAGCATCCACGAAATGGAGCAGACTTTGCTCGC
AGTCAGCGCACAGCGGCTGATTACATTGCGATGCCCGGTATGCGGTGGGATCCGCTGTCCGCATGATTCGCAAGATTGCC
CACGCAGCCGAGAAAAGCGGCAAACCGCGGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGAGTGTTGAAAGAAGCA
AAGGGGGAACAAGTCTACTATCATTATCCGACACTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGA
AGAAGAGTATCACCGCTGGATTGCCGAAGAGGAAGAAGCGGATAAGCCTCAAACTGCAGGGGCGCTTTCTTACCCGGGTC
GGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.469

95.722

0.521

Multiple sequence alignment