Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BCO26_RS08440 Genome accession   NC_015634
Coordinates   1690704..1692407 (-) Length   567 a.a.
NCBI ID   WP_013859600.1    Uniprot ID   -
Organism   Heyndrickxia coagulans 2-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1685704..1697407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCO26_RS08410 (BCO26_1642) - 1686418..1686570 (-) 153 WP_013859594.1 helix-turn-helix domain-containing protein -
  BCO26_RS08415 (BCO26_1643) - 1686694..1687035 (-) 342 WP_013859595.1 sigma-54 specific transcriptional regulator -
  BCO26_RS08420 (BCO26_1644) - 1687169..1687411 (+) 243 WP_013859596.1 DUF2627 domain-containing protein -
  BCO26_RS08425 (BCO26_1645) - 1687421..1688164 (-) 744 WP_029142208.1 glycerophosphodiester phosphodiesterase -
  BCO26_RS08430 (BCO26_1646) spo0A 1688289..1689074 (-) 786 WP_017553057.1 sporulation transcription factor Spo0A -
  BCO26_RS08435 (BCO26_1647) spoIVB 1689241..1690524 (-) 1284 WP_041819129.1 SpoIVB peptidase -
  BCO26_RS08440 (BCO26_1648) recN 1690704..1692407 (-) 1704 WP_013859600.1 DNA repair protein RecN Machinery gene
  BCO26_RS08445 (BCO26_1649) ahrC 1692425..1692874 (-) 450 WP_013859601.1 transcriptional regulator AhrC/ArgR -
  BCO26_RS08450 (BCO26_1650) - 1693038..1693862 (-) 825 WP_013859602.1 TlyA family RNA methyltransferase -
  BCO26_RS08455 (BCO26_1651) dxs 1693863..1695764 (-) 1902 WP_041819131.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BCO26_RS08460 (BCO26_1652) - 1695913..1696782 (-) 870 WP_041819132.1 polyprenyl synthetase family protein -
  BCO26_RS08465 (BCO26_1653) - 1696785..1697012 (-) 228 WP_013859605.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64439.28 Da        Isoelectric Point: 4.8255

>NTDB_id=41188 BCO26_RS08440 WP_013859600.1 1690704..1692407(-) (recN) [Heyndrickxia coagulans 2-6]
MLQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRGSSEFVRHGENRAEIEGLFLVEDGHPCMERA
REFGIEIEEGMVILRRDISKTGKSVCRINGKLVTISVLREIGSTLIDIHSQHETQELLNETYHLPLLDQYGQSEIETALL
DYEKLYKKYEAVYGRLKRMNENDQQLAQRLDLIQFQHEEIQNAGLRLHEDEELAEEKRKLVNFERLFESLNTGYEALAGE
QHGLDWLSLAMSHLETAAEVDGGLSDILESVQSCFYTLEDMSRSIRSRLDGLEFDPERLNVIEARLNEINQLKRKYGSTI
EEILEYGSKIEEEIESIVNRDHHVELLQEELQTVKRDLYLEAKQLSDLRKKWAGKLTENIHSELKQLYMDKTKFEVRFLA
AADDYYEADDIPFRRDGLDQVEFYISTNPGEPLKPLAKTASGGELSRIMLALKTIFSRHQGITSVIFDEVDTGVSGRVAQ
AIAEKIYHISVHSQVLCITHLPQVAAMADTHLLIMKETEKGRTRTKVKPLGQEEKIKEIGRMISGVEMTELTRQHAKELL
ELAEAIK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=41188 BCO26_RS08440 WP_013859600.1 1690704..1692407(-) (recN) [Heyndrickxia coagulans 2-6]
TTGCTGCAGGAATTATCGATTAAAAATTTTGCCATTATTGATGCGCTAACCCTCTCATTTGAAGCCGGGCTGACTGTCCT
GACAGGGGAGACCGGTGCCGGCAAATCGATTATTATCGATGCGATCCAGCTTTTAACAGGCGGGAGAGGGTCATCGGAGT
TTGTCCGGCACGGGGAAAACCGTGCTGAGATTGAGGGTTTATTTCTGGTCGAAGACGGCCATCCGTGTATGGAGCGCGCC
CGCGAATTCGGCATTGAGATTGAGGAAGGCATGGTAATTTTGCGGCGCGATATATCGAAAACAGGGAAAAGCGTCTGCCG
CATCAACGGAAAACTTGTGACGATTTCGGTGCTGCGCGAAATCGGGTCGACTTTAATTGATATCCACAGCCAGCACGAAA
CGCAGGAACTGCTGAACGAAACGTACCATCTGCCGCTGCTTGACCAGTACGGGCAAAGCGAGATCGAAACGGCCCTCCTT
GATTACGAAAAATTATATAAAAAATACGAAGCCGTTTACGGGCGGTTAAAAAGAATGAATGAAAACGACCAGCAGCTTGC
CCAGCGCCTTGACCTCATCCAGTTCCAGCATGAGGAAATCCAAAACGCAGGGCTGAGGCTGCATGAAGACGAGGAATTAG
CGGAAGAAAAACGAAAACTCGTCAATTTTGAACGGCTGTTTGAATCATTGAACACGGGGTATGAAGCGCTTGCCGGGGAA
CAGCACGGCCTCGACTGGCTCAGCCTTGCCATGAGCCATCTTGAAACCGCGGCCGAAGTGGATGGCGGGCTCTCTGACAT
TTTGGAATCCGTCCAAAGTTGTTTTTATACGCTCGAAGACATGTCCCGCTCGATCCGTTCCCGGCTTGACGGGCTTGAAT
TTGACCCGGAACGGCTTAACGTGATTGAAGCGCGGCTGAATGAGATTAACCAGTTAAAACGAAAATACGGCAGCACGATC
GAAGAAATTCTGGAATACGGGTCCAAAATTGAAGAAGAAATTGAATCGATCGTAAACCGCGACCATCATGTAGAGCTTTT
GCAAGAAGAACTGCAGACGGTAAAACGCGATCTTTATTTGGAAGCCAAACAGCTCAGCGATTTGCGCAAAAAATGGGCAG
GAAAGCTGACTGAAAATATCCATTCCGAATTAAAGCAGCTGTATATGGATAAAACAAAGTTTGAAGTCCGTTTTCTTGCC
GCTGCTGATGATTATTATGAGGCGGATGACATTCCGTTTAGGCGCGACGGGCTCGATCAGGTTGAATTTTACATTTCCAC
CAACCCGGGCGAACCGCTAAAACCGCTCGCAAAAACTGCTTCAGGCGGGGAATTGTCGCGGATTATGCTGGCATTAAAAA
CGATTTTTTCCCGGCACCAGGGGATCACTTCCGTCATTTTCGACGAAGTGGACACCGGCGTAAGCGGCCGCGTAGCACAG
GCGATTGCGGAAAAAATTTACCATATCTCGGTCCATTCGCAAGTTCTTTGCATTACCCATCTGCCGCAGGTTGCCGCCAT
GGCGGACACGCATCTGCTGATCATGAAAGAAACCGAAAAGGGGAGAACGCGGACAAAAGTGAAGCCTTTGGGGCAGGAAG
AAAAAATTAAAGAAATCGGCCGCATGATTTCAGGTGTTGAAATGACAGAGCTGACAAGACAGCATGCGAAAGAGCTCCTC
GAACTGGCCGAAGCGATAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.337

100

0.6

Multiple sequence alignment