Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   H4993_RS04970 Genome accession   NZ_CP059966
Coordinates   946159..946542 (-) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain C203     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 941159..951542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4993_RS04945 (H4993_04945) aspS 941723..943474 (+) 1752 WP_052822853.1 aspartate--tRNA ligase -
  H4993_RS04950 (H4993_04950) adk 943471..944049 (+) 579 WP_002858481.1 adenylate kinase -
  H4993_RS04955 (H4993_04955) ppa 944059..944577 (+) 519 WP_002852138.1 inorganic diphosphatase -
  H4993_RS04960 (H4993_04960) msrA 944618..945115 (+) 498 WP_002874288.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H4993_RS04965 (H4993_04965) - 945291..946130 (-) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H4993_RS04970 (H4993_04970) dprB 946159..946542 (-) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  H4993_RS04975 (H4993_04975) dprA 946539..947312 (-) 774 WP_002874287.1 DNA-processing protein DprA Machinery gene
  H4993_RS04980 (H4993_04980) - 947302..948384 (-) 1083 WP_182577095.1 divergent polysaccharide deacetylase family protein -
  H4993_RS04985 (H4993_04985) ilvC 948388..949410 (-) 1023 WP_002873648.1 ketol-acid reductoisomerase -
  H4993_RS04990 (H4993_04990) - 949529..951463 (+) 1935 WP_182577096.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=411867 H4993_RS04970 WP_002852281.1 946159..946542(-) (dprB) [Campylobacter jejuni strain C203]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=411867 H4993_RS04970 WP_002852281.1 946159..946542(-) (dprB) [Campylobacter jejuni strain C203]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGTAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment