Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECOK1_RS02345 Genome accession   NC_017628
Coordinates   497820..498425 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli IHE3034     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 492820..503425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECOK1_RS29305 - 493374..493472 (+) 99 Protein_450 hypothetical protein -
  ECOK1_RS02315 (ECOK1_0448) rsmS 493525..493686 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECOK1_RS02320 (ECOK1_0449) priC 493700..494227 (-) 528 WP_000844868.1 primosomal replication protein N'' -
  ECOK1_RS02325 (ECOK1_0450) ybaN 494297..494674 (+) 378 WP_001188900.1 DUF454 family protein -
  ECOK1_RS02330 (ECOK1_0451) apt 494827..495378 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECOK1_RS02335 (ECOK1_0452) dnaX 495507..497438 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  ECOK1_RS02340 (ECOK1_0453) ybaB 497491..497820 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECOK1_RS02345 (ECOK1_0454) recR 497820..498425 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECOK1_RS02350 (ECOK1_0455) htpG 498535..500409 (+) 1875 WP_000678211.1 molecular chaperone HtpG -
  ECOK1_RS02355 (ECOK1_0456) adk 500590..501234 (+) 645 WP_001331495.1 adenylate kinase -
  ECOK1_RS02360 (ECOK1_0458) hemH 501366..502328 (+) 963 WP_001250114.1 ferrochelatase -
  ECOK1_RS02365 (ECOK1_0457) aes 502325..503284 (-) 960 WP_000801795.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=41186 ECOK1_RS02345 WP_001195025.1 497820..498425(+) (recR) [Escherichia coli IHE3034]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=41186 ECOK1_RS02345 WP_001195025.1 497820..498425(+) (recR) [Escherichia coli IHE3034]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443