Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GRI05_RS02905 Genome accession   NZ_CP047248
Coordinates   587626..588429 (+) Length   267 a.a.
NCBI ID   WP_012027300.1    Uniprot ID   -
Organism   Streptococcus suis strain LSM178     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 582626..593429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRI05_RS02880 (GRI05_02960) - 583055..583753 (-) 699 WP_012028333.1 amino acid ABC transporter permease -
  GRI05_RS02885 (GRI05_02965) - 583768..584607 (-) 840 WP_012027305.1 transporter substrate-binding domain-containing protein -
  GRI05_RS02890 (GRI05_02970) - 584618..585379 (-) 762 WP_012027304.1 amino acid ABC transporter ATP-binding protein -
  GRI05_RS02895 (GRI05_02975) micA 585573..586277 (+) 705 WP_004298854.1 response regulator YycF Regulator
  GRI05_RS02900 (GRI05_02980) micB 586270..587619 (+) 1350 WP_012027301.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GRI05_RS02905 (GRI05_02985) vicX 587626..588429 (+) 804 WP_012027300.1 MBL fold metallo-hydrolase Regulator
  GRI05_RS02910 - 588685..588840 (+) 156 WP_014636649.1 hypothetical protein -
  GRI05_RS02915 (GRI05_02990) - 588948..589490 (+) 543 WP_012027299.1 ATP-binding cassette domain-containing protein -
  GRI05_RS02920 (GRI05_02995) - 589653..590402 (+) 750 WP_012027298.1 ATP-binding cassette domain-containing protein -
  GRI05_RS02925 (GRI05_03000) pbp2b 590479..592554 (+) 2076 WP_012775443.1 penicillin-binding protein PBP2B -
  GRI05_RS02930 (GRI05_03005) recR 592563..593159 (+) 597 WP_012027296.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29643.75 Da        Isoelectric Point: 5.7755

>NTDB_id=411856 GRI05_RS02905 WP_012027300.1 587626..588429(+) (vicX) [Streptococcus suis strain LSM178]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=411856 GRI05_RS02905 WP_012027300.1 587626..588429(+) (vicX) [Streptococcus suis strain LSM178]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGCCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCGCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCATCTTTGTAATGAAGATGGAGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768

Multiple sequence alignment