Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BCO26_RS04415 Genome accession   NC_015634
Coordinates   904419..906233 (+) Length   604 a.a.
NCBI ID   WP_013858792.1    Uniprot ID   -
Organism   Heyndrickxia coagulans 2-6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 899419..911233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCO26_RS04390 (BCO26_0831) - 900250..901191 (+) 942 WP_013858788.1 ABC transporter ATP-binding protein -
  BCO26_RS04395 (BCO26_0832) spxA 901472..901867 (+) 396 WP_013858789.1 transcriptional regulator SpxA -
  BCO26_RS04405 (BCO26_0833) mecA 902227..902886 (+) 660 WP_013858790.1 adaptor protein MecA -
  BCO26_RS04410 (BCO26_0834) - 903127..904353 (+) 1227 WP_258433227.1 competence protein CoiA -
  BCO26_RS04415 (BCO26_0835) pepF 904419..906233 (+) 1815 WP_013858792.1 oligoendopeptidase F Regulator
  BCO26_RS04420 - 906625..906816 (-) 192 WP_041818861.1 hypothetical protein -
  BCO26_RS04425 (BCO26_0836) - 907107..907964 (-) 858 WP_013858793.1 ClpXP adapter SpxH family protein -
  BCO26_RS04430 (BCO26_0837) - 907961..908362 (-) 402 WP_013858794.1 globin -
  BCO26_RS04435 (BCO26_0839) - 909221..910000 (-) 780 WP_013858796.1 lytic transglycosylase domain-containing protein -
  BCO26_RS04440 (BCO26_0840) - 909997..910581 (-) 585 WP_013858797.1 CYTH domain-containing protein -
  BCO26_RS04445 (BCO26_0841) - 910718..911101 (+) 384 WP_013858798.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69446.09 Da        Isoelectric Point: 5.0244

>NTDB_id=41178 BCO26_RS04415 WP_013858792.1 904419..906233(+) (pepF) [Heyndrickxia coagulans 2-6]
MENGKKVHALPSRDEVREALTWRLEDIFPSDDDWNKEYEAVKEKLADAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGIDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYVPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYHSAREAALAANHIPEKVYDQLVETVNRNLGLLQRYVALRKKVLQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGEEYRSILQEAFENRWIDVVENKGKQSGAYSSGVYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTNEYYKLNQKYYGSDIAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMASPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=41178 BCO26_RS04415 WP_013858792.1 904419..906233(+) (pepF) [Heyndrickxia coagulans 2-6]
ATGGAAAACGGAAAAAAAGTACACGCGTTGCCAAGCAGGGACGAGGTTCGTGAAGCATTAACCTGGAGGCTTGAGGATAT
TTTTCCAAGCGACGATGACTGGAATAAAGAATACGAAGCCGTAAAAGAAAAGCTGGCCGATGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCTGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACAGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGATACAACGAATGCCTTTTATCAGGGGATAGACAGCAAAGCGAAAAGTCTTGC
CGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTGTCGATTGAGGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGTGCCGCTTCAGCTGTACCGGCATGCATTGGAAGAAATTAATGAAATGCGCCCGCATATTTTATCTAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCGGAAGTGCTGAATACTTCCAGCACCACTTTCGGCATGCTCAACAATGCAGACCT
TGAGTTCCCGACAGTAATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGTTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAAAAATTGTACGCGACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTAGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTGCGGC
AAACCACATTCCGGAAAAAGTGTACGACCAGCTCGTGGAAACGGTGAACCGAAATCTCGGTTTGCTGCAGCGGTATGTTG
CTTTGCGCAAAAAAGTGCTGCAGCTTGATGAAGTGCATATGTACGATCTGTATACGCCACTTGTCCAGGACGCCGATATG
GAAGTGACATATGAAAAAGCGAAAGAGATCGTGCTCGATGGCCTCCATCCGCTCGGCGAGGAATACCGGAGCATTTTGCA
GGAGGCGTTTGAAAACCGCTGGATTGACGTGGTGGAGAACAAAGGCAAACAGAGCGGAGCCTATTCTTCAGGCGTTTATG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTATTCACTCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCCATTTTTGTCGCGGAAGTGGCTTCCAC
GTGCAATGAGGCGCTGTTGAATGACTATCTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTACTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTTTTCCGCCAGACGATGTTTGCTGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGTTGACGGCGGAACTTTTGACAAATGAGTATTATAAGCTGAACCAAAAATACTATGGTTCGGATATCGC
CATTGACCAGGAAATCGGGCTTGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTCTATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCCGTCAAACGCTATATCGGCTATTTG
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGGCGTCGCCCCAGCCGGTCGAAGA
TGCGTTAAAAGTATTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTTGGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.507

98.013

0.495

Multiple sequence alignment