Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   H5A01_RS00100 Genome accession   NZ_CP059964
Coordinates   17451..17834 (-) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain C1922C72     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 12451..22834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A01_RS00075 (H5A01_00075) aspS 13014..14765 (+) 1752 WP_167843427.1 aspartate--tRNA ligase -
  H5A01_RS00080 (H5A01_00080) adk 14762..15340 (+) 579 WP_052794065.1 adenylate kinase -
  H5A01_RS00085 (H5A01_00085) ppa 15350..15868 (+) 519 WP_002871349.1 inorganic diphosphatase -
  H5A01_RS00090 (H5A01_00090) msrA 15910..16407 (+) 498 WP_143298666.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H5A01_RS00095 (H5A01_00095) - 16583..17422 (-) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H5A01_RS00100 (H5A01_00100) dprB 17451..17834 (-) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  H5A01_RS00105 (H5A01_00105) dprA 17831..18604 (-) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  H5A01_RS00110 (H5A01_00110) - 18594..19676 (-) 1083 WP_167843426.1 divergent polysaccharide deacetylase family protein -
  H5A01_RS00115 (H5A01_00115) ilvC 19680..20702 (-) 1023 WP_167843425.1 ketol-acid reductoisomerase -
  H5A01_RS00120 (H5A01_00120) - 20821..22755 (+) 1935 WP_167843424.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=411752 H5A01_RS00100 WP_002852281.1 17451..17834(-) (dprB) [Campylobacter jejuni strain C1922C72]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=411752 H5A01_RS00100 WP_002852281.1 17451..17834(-) (dprB) [Campylobacter jejuni strain C1922C72]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449