Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GRT08_RS15035 Genome accession   NZ_CP047234
Coordinates   3036787..3037431 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3031787..3042431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS15000 (GRT08_14775) - 3032972..3033403 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  GRT08_RS15005 (GRT08_14780) - 3033403..3033744 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  GRT08_RS15010 (GRT08_14785) - 3033737..3035218 (+) 1482 WP_071392238.1 Na+/H+ antiporter subunit D -
  GRT08_RS15015 (GRT08_14790) - 3035224..3035700 (+) 477 WP_071392239.1 Na+/H+ antiporter subunit E -
  GRT08_RS15020 (GRT08_14795) - 3035700..3035984 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  GRT08_RS15025 (GRT08_14800) mnhG 3035968..3036342 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  GRT08_RS15030 (GRT08_14805) - 3036382..3036765 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  GRT08_RS15035 (GRT08_14810) comA 3036787..3037431 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  GRT08_RS15040 (GRT08_14815) comP 3037512..3039815 (-) 2304 WP_101562386.1 histidine kinase Regulator
  GRT08_RS15045 (GRT08_14825) comQ 3039968..3040900 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  GRT08_RS15050 (GRT08_14830) degQ 3041085..3041225 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  GRT08_RS15055 (GRT08_14835) - 3041690..3042031 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=411705 GRT08_RS15035 WP_003152052.1 3036787..3037431(-) (comA) [Bacillus amyloliquefaciens strain FJ4]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=411705 GRT08_RS15035 WP_003152052.1 3036787..3037431(-) (comA) [Bacillus amyloliquefaciens strain FJ4]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACTCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment