Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H5C70_RS08745 Genome accession   NZ_CP059947
Coordinates   1832322..1833749 (-) Length   475 a.a.
NCBI ID   WP_000980603.1    Uniprot ID   -
Organism   Escherichia coli strain 268.2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1827322..1838749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5C70_RS08715 (H5C70_08715) yeeZ 1827377..1828201 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  H5C70_RS08720 (H5C70_08720) yeeY 1828247..1829176 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  H5C70_RS08725 (H5C70_08725) yoeI 1829391..1829453 (+) 63 WP_010723108.1 membrane protein YoeI -
  H5C70_RS08730 (H5C70_08730) plaP 1829443..1830801 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H5C70_RS08735 (H5C70_08735) tsuA 1830980..1832038 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  H5C70_RS08740 (H5C70_08740) tsuB 1832052..1832279 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H5C70_RS08745 (H5C70_08745) sbcB 1832322..1833749 (-) 1428 WP_000980603.1 exodeoxyribonuclease I Machinery gene
  H5C70_RS08750 (H5C70_08750) dacD 1833958..1835124 (+) 1167 WP_001565638.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H5C70_RS08755 (H5C70_08755) sbmC 1835243..1835716 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  H5C70_RS08760 (H5C70_08760) yeeA 1835914..1836972 (+) 1059 WP_001200895.1 FUSC family protein -
  H5C70_RS08765 (H5C70_08765) tmaR 1837144..1837473 (+) 330 WP_000450409.1 DUF496 family protein -
  H5C70_RS24720 - 1837574..1837939 (-) 366 WP_001280454.1 EutP/PduV family microcompartment system protein -
  H5C70_RS24555 - 1838210..1838581 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=411702 H5C70_RS08745 WP_000980603.1 1832322..1833749(-) (sbcB) [Escherichia coli strain 268.2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=411702 H5C70_RS08745 WP_000980603.1 1832322..1833749(-) (sbcB) [Escherichia coli strain 268.2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCATCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581