Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   GRT08_RS13185 Genome accession   NZ_CP047234
Coordinates   2684631..2685383 (-) Length   250 a.a.
NCBI ID   WP_202735648.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2679631..2690383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS13160 (GRT08_12970) mreC 2680067..2680930 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  GRT08_RS13165 (GRT08_12975) mreB 2680961..2681974 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  GRT08_RS13170 (GRT08_12980) radC 2682066..2682761 (-) 696 WP_007408165.1 DNA repair protein RadC -
  GRT08_RS13175 (GRT08_12985) - 2682793..2683362 (-) 570 WP_070082167.1 nucleoside triphosphate pyrophosphatase -
  GRT08_RS13180 (GRT08_12990) - 2683503..2684504 (-) 1002 WP_070082168.1 SPOR domain-containing protein -
  GRT08_RS13185 (GRT08_12995) comC 2684631..2685383 (-) 753 WP_202735648.1 A24 family peptidase Machinery gene
  GRT08_RS13190 (GRT08_13000) - 2685523..2686815 (-) 1293 WP_071391542.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  GRT08_RS13195 (GRT08_13005) - 2686874..2689516 (-) 2643 WP_071391541.1 valine--tRNA ligase -
  GRT08_RS13200 (GRT08_13010) - 2689969..2690160 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27134.83 Da        Isoelectric Point: 9.2521

>NTDB_id=411700 GRT08_RS13185 WP_202735648.1 2684631..2685383(-) (comC) [Bacillus amyloliquefaciens strain FJ4]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPIVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=411700 GRT08_RS13185 WP_202735648.1 2684631..2685383(-) (comC) [Bacillus amyloliquefaciens strain FJ4]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCATCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment