Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BCO26_RS03435 Genome accession   NC_015634
Coordinates   709028..710413 (+) Length   461 a.a.
NCBI ID   WP_041818797.1    Uniprot ID   -
Organism   Heyndrickxia coagulans 2-6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 704028..715413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCO26_RS03415 (BCO26_0646) - 704936..705619 (+) 684 WP_013858603.1 response regulator transcription factor -
  BCO26_RS03425 (BCO26_0647) - 705900..707324 (-) 1425 WP_013858604.1 amino acid permease -
  BCO26_RS03430 (BCO26_0648) - 707890..708732 (+) 843 WP_013858605.1 DegV family protein -
  BCO26_RS03435 (BCO26_0651) comFA 709028..710413 (+) 1386 WP_041818797.1 DEAD/DEAH box helicase Machinery gene
  BCO26_RS03440 (BCO26_0652) - 710406..711113 (+) 708 WP_013858609.1 ComF family protein -
  BCO26_RS03445 (BCO26_0653) - 711180..711575 (+) 396 WP_013858610.1 TIGR03826 family flagellar region protein -
  BCO26_RS03450 (BCO26_0654) flgM 711646..711912 (+) 267 WP_013858611.1 flagellar biosynthesis anti-sigma factor FlgM -
  BCO26_RS03455 (BCO26_0655) - 711925..712395 (+) 471 WP_013858612.1 flagellar protein FlgN -
  BCO26_RS03460 (BCO26_0656) flgK 712418..714034 (+) 1617 WP_041818799.1 flagellar hook-associated protein FlgK -
  BCO26_RS03465 (BCO26_0657) flgL 714049..714942 (+) 894 WP_013858614.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51666.95 Da        Isoelectric Point: 8.6655

>NTDB_id=41169 BCO26_RS03435 WP_041818797.1 709028..710413(+) (comFA) [Heyndrickxia coagulans 2-6]
MPSVFSEQLQHHLAGRILLEPEIPFSPELLEQHLKQGWIRAEPAIQGEFPHCVCLRCGNRAPHLFAEFPCAHCGKTSIYC
RNCLMMGRVTACKPLFTWAGPAPAFHPPRHPLHWEGTLSEGQQAASEAVKIAILQKNELLVWAVCGAGKTEVLFNGIEAA
LANGERVCIATPRTDVVLELAPRFRRVFPDIPIAALYGGSPDRHKWAQLVISTTHQLYRFASAFDVVIVDEVDAFPYTFD
ETLQRAVQKAAKDRCARIYLTATPGETWQLECKAGKRPFVTIPARYHRKPLPVPIFKWAGNWRRKFEKGQLPVPVEAWVK
KRLETGKQALLFLPNIRLMKKAEPVFKQLHPSIESVHAEDPERKEKVEKMRARETPLLLTTTILERGVTFPDIDVCVVGA
EDAIFTEAALVQIAGRAGRSADFPNGDVTFFHYGKSNAMVKAQRHILSMNEEAGKRGLLDA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=41169 BCO26_RS03435 WP_041818797.1 709028..710413(+) (comFA) [Heyndrickxia coagulans 2-6]
TTGCCTTCTGTTTTCTCCGAACAGCTTCAACACCACCTCGCAGGGAGGATCCTGCTCGAACCGGAAATCCCTTTTTCGCC
GGAACTGCTCGAACAGCACTTAAAACAAGGCTGGATCCGCGCTGAGCCGGCGATTCAGGGCGAATTCCCGCACTGTGTCT
GCTTGCGCTGCGGCAACCGCGCGCCGCATCTTTTTGCCGAATTCCCTTGCGCCCACTGCGGGAAAACGAGCATCTATTGC
CGGAACTGCCTGATGATGGGGCGGGTTACCGCATGCAAGCCGCTTTTCACATGGGCAGGCCCTGCGCCCGCATTCCACCC
GCCCCGGCACCCGCTCCATTGGGAAGGGACCCTCTCTGAAGGGCAGCAGGCCGCATCCGAAGCGGTCAAAATAGCCATTC
TCCAAAAAAATGAGCTCTTGGTTTGGGCGGTTTGCGGAGCAGGTAAAACAGAGGTCCTTTTTAACGGGATTGAAGCGGCG
CTTGCAAACGGCGAACGCGTCTGCATCGCGACACCAAGGACAGATGTCGTCCTTGAACTTGCCCCCCGCTTCCGCCGCGT
TTTCCCGGATATTCCGATTGCCGCGCTCTACGGCGGCAGCCCTGACCGCCATAAATGGGCGCAGCTCGTGATCTCCACTA
CCCACCAGCTGTACCGCTTCGCATCCGCCTTTGATGTCGTGATTGTAGATGAAGTGGACGCTTTTCCGTATACTTTCGAT
GAAACGCTGCAGCGCGCCGTCCAAAAAGCGGCAAAAGATAGGTGCGCCCGCATTTATCTTACCGCAACGCCGGGTGAAAC
ATGGCAGCTTGAATGCAAGGCAGGCAAGCGCCCGTTTGTCACGATCCCGGCCCGTTACCACCGCAAGCCCCTCCCTGTTC
CTATATTCAAATGGGCAGGCAACTGGCGGAGAAAGTTTGAAAAAGGACAGCTCCCGGTTCCAGTTGAAGCATGGGTAAAA
AAGAGACTTGAAACCGGAAAACAGGCGCTTCTTTTTCTCCCGAACATCCGCCTCATGAAAAAAGCAGAACCGGTTTTTAA
ACAACTGCATCCGTCGATTGAATCGGTGCACGCAGAAGACCCGGAACGGAAAGAAAAAGTGGAAAAGATGCGCGCCCGCG
AAACGCCGCTTTTGCTGACGACGACCATTCTTGAACGCGGCGTCACGTTCCCGGACATTGATGTCTGTGTCGTCGGGGCG
GAAGATGCCATTTTTACGGAAGCCGCCCTCGTCCAGATCGCGGGCCGGGCTGGGAGAAGCGCCGATTTCCCAAATGGGGA
TGTTACGTTCTTCCATTATGGAAAATCAAATGCGATGGTGAAAGCACAGCGCCATATTCTCTCCATGAATGAAGAAGCGG
GAAAGCGGGGGTTGCTCGATGCATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(322-420)

Type III restriction enzyme, res subunit (ResIII)

(118-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.89

98.265

0.49
  comFA Latilactobacillus sakei subsp. sakei 23K

40.238

91.106

0.367

Multiple sequence alignment