Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GRT08_RS10695 Genome accession   NZ_CP047234
Coordinates   2189167..2189775 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2184167..2194775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS10655 (GRT08_10490) - 2185220..2185726 (-) 507 WP_128575018.1 PTS glucose transporter subunit IIA -
  GRT08_RS10660 (GRT08_10495) - 2185865..2186278 (+) 414 WP_070082015.1 Hsp20/alpha crystallin family protein -
  GRT08_RS10665 (GRT08_10500) - 2186308..2186742 (-) 435 WP_377802706.1 YppG family protein -
  GRT08_RS10670 (GRT08_10505) - 2186929..2187111 (+) 183 WP_003153532.1 YppF family protein -
  GRT08_RS10675 (GRT08_10510) - 2187150..2187518 (-) 369 WP_003153529.1 YppE family protein -
  GRT08_RS10680 (GRT08_10515) - 2187564..2187809 (-) 246 WP_128575019.1 DUF5446 family protein -
  GRT08_RS10685 (GRT08_10520) sspM 2188015..2188119 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  GRT08_RS10690 (GRT08_10525) - 2188163..2189125 (-) 963 WP_101562218.1 DUF2515 domain-containing protein -
  GRT08_RS10695 (GRT08_10530) recU 2189167..2189775 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  GRT08_RS10700 (GRT08_10535) - 2189814..2192597 (+) 2784 WP_101562219.1 PBP1A family penicillin-binding protein -
  GRT08_RS10705 (GRT08_10540) - 2192676..2193167 (-) 492 WP_046559838.1 YpoC family protein -
  GRT08_RS10710 (GRT08_10545) nth 2193164..2193823 (-) 660 WP_094247837.1 endonuclease III -
  GRT08_RS10715 (GRT08_10550) dnaD 2193842..2194540 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=411682 GRT08_RS10695 WP_003153521.1 2189167..2189775(+) (recU) [Bacillus amyloliquefaciens strain FJ4]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=411682 GRT08_RS10695 WP_003153521.1 2189167..2189775(+) (recU) [Bacillus amyloliquefaciens strain FJ4]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment