Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GRT08_RS08825 Genome accession   NZ_CP047234
Coordinates   1796598..1797032 (+) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1791598..1802032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS08820 (GRT08_08705) - 1795098..1796309 (-) 1212 WP_377803146.1 cytochrome P450 -
  GRT08_RS08825 (GRT08_08710) nucA/comI 1796598..1797032 (+) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GRT08_RS08830 (GRT08_08715) - 1797092..1797847 (+) 756 WP_003154084.1 YoaK family protein -
  GRT08_RS08835 (GRT08_08720) - 1797881..1798243 (-) 363 WP_007410383.1 hypothetical protein -
  GRT08_RS08840 (GRT08_08725) - 1798436..1799764 (-) 1329 WP_039063127.1 S8 family peptidase -
  GRT08_RS08845 (GRT08_08730) - 1799943..1800176 (+) 234 WP_015239897.1 hypothetical protein -
  GRT08_RS08850 (GRT08_08735) - 1800432..1801139 (+) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  GRT08_RS08855 (GRT08_08740) - 1801199..1801651 (+) 453 WP_007410380.1 OsmC family protein -
  GRT08_RS08860 (GRT08_08745) - 1801665..1802018 (-) 354 WP_007410379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=411681 GRT08_RS08825 WP_007611576.1 1796598..1797032(+) (nucA/comI) [Bacillus amyloliquefaciens strain FJ4]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=411681 GRT08_RS08825 WP_007611576.1 1796598..1797032(+) (nucA/comI) [Bacillus amyloliquefaciens strain FJ4]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGAGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment