Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GRT08_RS07410 Genome accession   NZ_CP047234
Coordinates   1405035..1405319 (+) Length   94 a.a.
NCBI ID   WP_377803114.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400035..1410319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS07390 (GRT08_07275) - 1401280..1402188 (+) 909 WP_101562974.1 ketopantoate reductase family protein -
  GRT08_RS07395 (GRT08_07280) - 1402219..1403451 (-) 1233 WP_070081754.1 aminopeptidase -
  GRT08_RS07400 (GRT08_07285) - 1403552..1403686 (-) 135 WP_003154559.1 protein YkpC -
  GRT08_RS07405 (GRT08_07290) mreBH 1403758..1404765 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  GRT08_RS07410 (GRT08_07295) abrB 1405035..1405319 (+) 285 WP_377803114.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GRT08_RS07415 (GRT08_07300) - 1405491..1406795 (+) 1305 WP_014304932.1 ATP-binding protein -
  GRT08_RS07420 (GRT08_07305) - 1406797..1407624 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  GRT08_RS07425 (GRT08_07310) ktrC 1407665..1408330 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  GRT08_RS07430 (GRT08_07315) ade 1408479..1410212 (+) 1734 WP_176283298.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10560.39 Da        Isoelectric Point: 5.2271

>NTDB_id=411676 GRT08_RS07410 WP_377803114.1 1405035..1405319(+) (abrB) [Bacillus amyloliquefaciens strain FJ4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKVILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=411676 GRT08_RS07410 WP_377803114.1 1405035..1405319(+) (abrB) [Bacillus amyloliquefaciens strain FJ4]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGAATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAGTTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment