Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GRT08_RS07300 Genome accession   NZ_CP047234
Coordinates   1384537..1385133 (+) Length   198 a.a.
NCBI ID   WP_070081746.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1379537..1390133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS07270 (GRT08_07155) - 1379752..1380207 (+) 456 WP_071391903.1 flavodoxin -
  GRT08_RS07275 (GRT08_07160) dapD 1380289..1380999 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GRT08_RS07280 (GRT08_07165) - 1381070..1382194 (+) 1125 WP_101562970.1 N-acetyldiaminopimelate deacetylase -
  GRT08_RS07285 (GRT08_07170) - 1382255..1382500 (+) 246 WP_003154596.1 YkuS family protein -
  GRT08_RS07290 (GRT08_07175) - 1382534..1383340 (-) 807 WP_060386912.1 mechanosensitive ion channel family protein -
  GRT08_RS07295 (GRT08_07180) - 1383627..1384085 (+) 459 WP_071391901.1 redoxin domain-containing protein -
  GRT08_RS07300 (GRT08_07185) rok 1384537..1385133 (+) 597 WP_070081746.1 transcriptional regulator Rok Regulator
  GRT08_RS07305 (GRT08_07190) - 1385154..1386146 (-) 993 WP_069473386.1 sporulation protein -
  GRT08_RS07310 (GRT08_07195) - 1386292..1386894 (+) 603 WP_071391898.1 molybdenum cofactor guanylyltransferase -
  GRT08_RS07315 (GRT08_07200) - 1386946..1387965 (+) 1020 WP_071391897.1 molybdopterin-synthase adenylyltransferase MoeB -
  GRT08_RS07320 (GRT08_07205) glp 1387983..1389275 (+) 1293 WP_071391896.1 gephyrin-like molybdotransferase Glp -
  GRT08_RS07325 (GRT08_07210) mobB 1389236..1389757 (+) 522 WP_041482361.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22583.61 Da        Isoelectric Point: 9.6909

>NTDB_id=411675 GRT08_RS07300 WP_070081746.1 1384537..1385133(+) (rok) [Bacillus amyloliquefaciens strain FJ4]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKNDSLPVLAELAAQEMRSYQKPQ
TQPQSSQQQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=411675 GRT08_RS07300 WP_070081746.1 1384537..1385133(+) (rok) [Bacillus amyloliquefaciens strain FJ4]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAATGACTCCCTCCCGGTACTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCAGCAGATGCAGTCTATTACGTCTCTTCCCGCAGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCGAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

87.629

97.98

0.859

Multiple sequence alignment