Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GRT08_RS07200 Genome accession   NZ_CP047234
Coordinates   1368673..1369137 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1363673..1374137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS07180 (GRT08_07070) - 1364153..1365973 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  GRT08_RS07185 (GRT08_07075) - 1365949..1367168 (-) 1220 Protein_1356 aminotransferase A -
  GRT08_RS07190 - 1367369..1367530 (-) 162 WP_007409608.1 hypothetical protein -
  GRT08_RS07195 (GRT08_07080) cheV 1367719..1368630 (+) 912 WP_071391910.1 chemotaxis protein CheV -
  GRT08_RS07200 (GRT08_07085) kre 1368673..1369137 (-) 465 WP_003154622.1 YkyB family protein Regulator
  GRT08_RS07205 (GRT08_07090) - 1369260..1370552 (-) 1293 WP_071391909.1 MFS transporter -
  GRT08_RS07210 (GRT08_07095) - 1370628..1371122 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  GRT08_RS07215 (GRT08_07100) - 1371197..1372060 (-) 864 WP_071391907.1 metallophosphoesterase -
  GRT08_RS07220 (GRT08_07105) fadH 1372204..1372968 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  GRT08_RS07225 (GRT08_07110) - 1373079..1373627 (+) 549 WP_128574652.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=411674 GRT08_RS07200 WP_003154622.1 1368673..1369137(-) (kre) [Bacillus amyloliquefaciens strain FJ4]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=411674 GRT08_RS07200 WP_003154622.1 1368673..1369137(-) (kre) [Bacillus amyloliquefaciens strain FJ4]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment