Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GRT08_RS05275 Genome accession   NZ_CP047234
Coordinates   1011566..1012144 (+) Length   192 a.a.
NCBI ID   WP_377803071.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006566..1017144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS05250 - 1007066..1007581 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  GRT08_RS05255 - 1007825..1008565 (-) 741 Protein_971 protoglobin domain-containing protein -
  GRT08_RS05260 (GRT08_05215) - 1008481..1010004 (-) 1524 WP_377803069.1 FAD-dependent oxidoreductase -
  GRT08_RS05265 (GRT08_05220) - 1010129..1010986 (+) 858 WP_377803070.1 SDR family oxidoreductase -
  GRT08_RS05270 (GRT08_05225) - 1011017..1011250 (-) 234 WP_003155181.1 IDEAL domain-containing protein -
  GRT08_RS05275 (GRT08_05230) comK 1011566..1012144 (+) 579 WP_377803071.1 competence protein ComK Regulator
  GRT08_RS05280 (GRT08_05235) - 1012290..1012657 (+) 368 Protein_976 iron chaperone -
  GRT08_RS05285 (GRT08_05240) - 1012684..1013055 (+) 372 WP_063174180.1 iron chaperone -
  GRT08_RS05290 (GRT08_05245) - 1013194..1013904 (-) 711 WP_003155170.1 YrpD family protein -
  GRT08_RS05295 (GRT08_05250) - 1014100..1014369 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  GRT08_RS05300 (GRT08_05255) - 1014402..1014719 (-) 318 WP_003155166.1 YbjQ family protein -
  GRT08_RS05305 (GRT08_05260) - 1014760..1016229 (-) 1470 WP_063174181.1 sodium:solute symporter -
  GRT08_RS05310 (GRT08_05265) - 1016226..1016426 (-) 201 WP_003155162.1 DUF3311 domain-containing protein -
  GRT08_RS05315 (GRT08_05270) - 1016547..1016906 (-) 360 WP_012117241.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22327.63 Da        Isoelectric Point: 8.1419

>NTDB_id=411663 GRT08_RS05275 WP_377803071.1 1011566..1012144(+) (comK) [Bacillus amyloliquefaciens strain FJ4]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTIFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=411663 GRT08_RS05275 WP_377803071.1 1011566..1012144(+) (comK) [Bacillus amyloliquefaciens strain FJ4]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCAGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGGACCATTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment