Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H5C75_RS20535 Genome accession   NZ_CP059929
Coordinates   4250476..4251903 (-) Length   475 a.a.
NCBI ID   WP_072132999.1    Uniprot ID   -
Organism   Escherichia coli strain 162.2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4245476..4256903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5C75_RS20505 (H5C75_20370) yeeZ 4245531..4246355 (+) 825 WP_032202495.1 SDR family oxidoreductase -
  H5C75_RS20510 (H5C75_20375) yeeY 4246401..4247330 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H5C75_RS20515 (H5C75_20380) yoeI 4247545..4247607 (+) 63 WP_010723108.1 membrane protein YoeI -
  H5C75_RS20520 (H5C75_20385) plaP 4247597..4248955 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H5C75_RS20525 (H5C75_20390) tsuA 4249134..4250192 (+) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  H5C75_RS20530 (H5C75_20395) tsuB 4250206..4250433 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H5C75_RS20535 (H5C75_20400) sbcB 4250476..4251903 (-) 1428 WP_072132999.1 exodeoxyribonuclease I Machinery gene
  H5C75_RS20540 (H5C75_20405) dacD 4252112..4253278 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H5C75_RS20545 (H5C75_20410) sbmC 4253397..4253870 (+) 474 WP_032202496.1 DNA gyrase inhibitor SbmC -
  H5C75_RS20550 (H5C75_20415) yeeA 4254069..4255128 (+) 1060 Protein_4026 FUSC family protein -
  H5C75_RS20555 (H5C75_20420) tmaR 4255300..4255629 (+) 330 WP_000450409.1 DUF496 family protein -
  H5C75_RS20560 (H5C75_20425) - 4255730..4255912 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H5C75_RS20565 (H5C75_20430) - 4255984..4256112 (+) 129 Protein_4029 transposase domain-containing protein -
  H5C75_RS20570 (H5C75_20435) - 4256401..4256481 (-) 81 Protein_4030 hypothetical protein -
  H5C75_RS20575 (H5C75_20440) yeeW 4256527..4256721 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4720

>NTDB_id=411661 H5C75_RS20535 WP_072132999.1 4250476..4251903(-) (sbcB) [Escherichia coli strain 162.2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=411661 H5C75_RS20535 WP_072132999.1 4250476..4251903(-) (sbcB) [Escherichia coli strain 162.2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581