Detailed information NTG0411654

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: GRT08_RS01980
• Genome accession: NZ_CP047234
• Coordinates: 386095..387243 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain FJ4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 381095..392243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRT08_RS01960 (GRT08_01945)	-	381492..382175 (-)	684	WP_070081357.1	ABC transporter ATP-binding protein	-
GRT08_RS01965 (GRT08_01950)	-	382190..383626 (-)	1437	WP_101562696.1	ABC transporter permease	-
GRT08_RS01970 (GRT08_01955)	-	383839..384522 (+)	684	WP_007410267.1	response regulator transcription factor	-
GRT08_RS01975 (GRT08_01960)	-	384509..385942 (+)	1434	WP_182069772.1	HAMP domain-containing sensor histidine kinase	-
GRT08_RS01980 (GRT08_01965)	rapC	386095..387243 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
GRT08_RS01985 (GRT08_01970)	phrC	387227..387346 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
GRT08_RS01990 (GRT08_01975)	-	387497..387607 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
GRT08_RS01995 (GRT08_01980)	-	387687..389051 (-)	1365	WP_101562697.1	aspartate kinase	-
GRT08_RS02000 (GRT08_01985)	ceuB	389466..390419 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
GRT08_RS02005 (GRT08_01990)	-	390409..391356 (+)	948	WP_007410274.1	iron chelate uptake ABC transporter family permease subunit	-
GRT08_RS02010 (GRT08_01995)	-	391350..392108 (+)	759	WP_071392129.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=411654 GRT08_RS01980 WP_003156336.1 386095..387243(+) (rapC) [Bacillus amyloliquefaciens strain FJ4]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=411654 GRT08_RS01980 WP_003156336.1 386095..387243(+) (rapC) [Bacillus amyloliquefaciens strain FJ4]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568