Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   GRT08_RS01805 Genome accession   NZ_CP047234
Coordinates   342377..342541 (+) Length   54 a.a.
NCBI ID   WP_269195014.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 337377..347541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS01800 srfAB 339268..342360 (+) 3093 Protein_314 surfactin non-ribosomal peptide synthetase SrfAB -
  GRT08_RS01805 comS 342377..342541 (+) 165 WP_269195014.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6238.22 Da        Isoelectric Point: 11.7559

>NTDB_id=411653 GRT08_RS01805 WP_269195014.1 342377..342541(+) (comS) [Bacillus amyloliquefaciens strain FJ4]
MRARRNSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=411653 GRT08_RS01805 WP_269195014.1 342377..342541(+) (comS) [Bacillus amyloliquefaciens strain FJ4]
ATGAGAGCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGATC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5

Multiple sequence alignment