Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GRT08_RS01775 Genome accession   NZ_CP047234
Coordinates   325324..325761 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 320324..330761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS01735 - 320917..321045 (-) 129 Protein_301 hypothetical protein -
  GRT08_RS01740 (GRT08_01735) - 321190..322392 (+) 1203 WP_128574912.1 GTP-binding protein -
  GRT08_RS01745 (GRT08_01740) - 322457..323593 (+) 1137 WP_077721769.1 zinc-dependent alcohol dehydrogenase -
  GRT08_RS01750 (GRT08_01745) - 323608..324042 (+) 435 WP_021494203.1 RDD family protein -
  GRT08_RS01755 (GRT08_01750) - 324160..324435 (+) 276 WP_369719109.1 YckD family protein -
  GRT08_RS01760 (GRT08_01755) - 324539..324730 (+) 192 WP_071392145.1 family 1 glycosylhydrolase -
  GRT08_RS01765 (GRT08_01760) - 324655..324884 (+) 230 Protein_307 family 1 glycosylhydrolase -
  GRT08_RS01770 (GRT08_01765) nin/comJ 324903..325301 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  GRT08_RS01775 (GRT08_01770) nucA/comI 325324..325761 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GRT08_RS01780 (GRT08_01775) hxlB 326120..326677 (-) 558 WP_202735831.1 6-phospho-3-hexuloisomerase -
  GRT08_RS01785 (GRT08_01780) hxlA 326674..327309 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  GRT08_RS01790 (GRT08_01785) - 327541..327903 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=411652 GRT08_RS01775 WP_003156588.1 325324..325761(-) (nucA/comI) [Bacillus amyloliquefaciens strain FJ4]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=411652 GRT08_RS01775 WP_003156588.1 325324..325761(-) (nucA/comI) [Bacillus amyloliquefaciens strain FJ4]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTCACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment