Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BCO26_RS00505 Genome accession   NC_015634
Coordinates   101398..102768 (+) Length   456 a.a.
NCBI ID   WP_041818577.1    Uniprot ID   A0A150JRY6
Organism   Heyndrickxia coagulans 2-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96398..107768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCO26_RS00485 (BCO26_0088) - 96695..97159 (+) 465 WP_371836356.1 CtsR family transcriptional regulator -
  BCO26_RS00490 - 97179..97724 (+) 546 WP_017551242.1 UvrB/UvrC motif-containing protein -
  BCO26_RS00495 (BCO26_0090) - 97724..98791 (+) 1068 WP_013858050.1 protein arginine kinase -
  BCO26_RS00500 (BCO26_0091) clpC 98808..101258 (+) 2451 WP_013858051.1 ATP-dependent protease ATP-binding subunit ClpC -
  BCO26_RS00505 (BCO26_0092) radA 101398..102768 (+) 1371 WP_041818577.1 DNA repair protein RadA Machinery gene
  BCO26_RS00510 (BCO26_0093) - 103098..104183 (+) 1086 WP_013858053.1 PIN/TRAM domain-containing protein -
  BCO26_RS00515 (BCO26_0094) ispD 104249..104929 (+) 681 WP_017551237.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BCO26_RS00520 (BCO26_0095) ispF 104932..105408 (+) 477 WP_019722060.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BCO26_RS00525 (BCO26_0096) gltX 105804..107264 (+) 1461 WP_013858056.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49728.25 Da        Isoelectric Point: 8.0539

>NTDB_id=41165 BCO26_RS00505 WP_041818577.1 101398..102768(+) (radA) [Heyndrickxia coagulans 2-6]
MAKKTVKFVCQNCGYASPKWMGKCPQCNQWNQMVEEAEAPKRRGFFLHPEPGNETKAAPITSIESKEEKRTKVDFGELNR
VLGGGIVAGSLVLIGGDPGIGKSTLLLQVSSQLAKHGLNVLYISGEESAKQTKLRADRLNIHTDHLYVLPETDLSVIQQA
IDELNPGFVIIDSIQTIYHPEIQSAPGSVSQVRETTAQLMRTAKTKNVAIFIVGHVTKEGSIAGPRVLEHMVDTVLYFEG
ERHNAYRILRAVKNRFGSTNEIAILEMKESGLEEVQNPSEIFLEERTKGAAGSTVVASIEGTRPVLVEIQALLAPTFFNM
PRRMASGIDYNRVTLIMAVLEKRAGLLIQNQDAYLKVAGGLKVDEPAVDLAVAVSVASSFRDKPTNADDCIIGEVGLTGE
VRRVSRIEQRVQEAAKLGFRRAIIPKNNMGGWTPPKEIQVIGVATIQEALKAALGG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=41165 BCO26_RS00505 WP_041818577.1 101398..102768(+) (radA) [Heyndrickxia coagulans 2-6]
ATGGCAAAAAAAACCGTGAAGTTTGTTTGCCAGAACTGCGGCTACGCGTCGCCAAAATGGATGGGAAAGTGCCCGCAATG
CAACCAGTGGAACCAGATGGTGGAGGAAGCGGAGGCGCCAAAAAGGAGGGGCTTTTTTTTACATCCTGAGCCCGGAAATG
AAACCAAAGCGGCGCCTATTACGTCTATAGAGTCTAAAGAAGAAAAAAGGACGAAAGTGGATTTTGGCGAGCTGAATCGT
GTCCTCGGAGGCGGCATTGTTGCCGGGTCACTTGTTTTGATCGGCGGGGATCCCGGGATCGGCAAATCAACCCTGCTTTT
GCAAGTGTCATCACAACTGGCAAAGCACGGGTTAAATGTACTGTATATCTCCGGGGAGGAATCGGCGAAACAGACGAAAT
TAAGGGCAGACCGGTTAAACATCCATACCGACCATCTTTATGTGCTGCCGGAAACGGACCTTTCCGTGATCCAGCAGGCG
ATAGATGAACTGAACCCCGGCTTTGTTATCATTGATTCCATCCAGACGATTTACCATCCGGAAATCCAGTCTGCGCCGGG
CAGTGTGTCGCAAGTGAGGGAAACGACTGCACAGCTGATGCGGACGGCAAAAACAAAAAATGTGGCCATCTTCATTGTCG
GCCACGTGACAAAAGAAGGCTCCATTGCCGGCCCGCGCGTGCTTGAACATATGGTGGATACGGTCCTGTATTTTGAAGGT
GAACGCCATAATGCCTACCGGATATTAAGGGCGGTCAAAAACCGCTTTGGCTCGACCAATGAAATTGCGATTTTGGAAAT
GAAAGAATCCGGTTTGGAAGAAGTCCAGAACCCTTCCGAAATTTTTCTGGAAGAACGGACAAAAGGTGCAGCCGGTTCTA
CCGTGGTTGCTTCCATTGAGGGGACGCGCCCGGTGCTTGTCGAGATCCAGGCGCTTTTGGCTCCGACGTTTTTCAATATG
CCGCGGCGGATGGCATCCGGGATTGATTATAACCGTGTCACGCTGATTATGGCGGTGCTTGAAAAACGGGCCGGCCTTTT
GATTCAGAACCAGGATGCATATTTAAAAGTTGCCGGCGGCCTGAAAGTGGATGAACCGGCAGTGGATTTGGCAGTTGCCG
TCAGCGTGGCATCCAGTTTCCGCGACAAGCCGACAAATGCGGATGACTGCATTATCGGAGAAGTCGGGCTGACGGGGGAA
GTCAGGCGGGTGTCCCGCATTGAGCAGCGCGTCCAGGAAGCGGCAAAGCTCGGTTTCCGGCGGGCGATCATTCCGAAAAA
TAATATGGGTGGGTGGACGCCGCCAAAGGAGATTCAAGTGATCGGCGTCGCTACCATCCAGGAAGCTTTAAAAGCGGCAC
TCGGAGGATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-220)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150JRY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.024

100

0.715
  radA Streptococcus mitis NCTC 12261

63.415

98.904

0.627
  radA Streptococcus mitis SK321

63.193

98.904

0.625
  radA Streptococcus pneumoniae Rx1

63.193

98.904

0.625
  radA Streptococcus pneumoniae D39

63.193

98.904

0.625
  radA Streptococcus pneumoniae R6

63.193

98.904

0.625
  radA Streptococcus pneumoniae TIGR4

63.193

98.904

0.625

Multiple sequence alignment