Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GS397_RS13690 Genome accession   NZ_CP047218
Coordinates   2889046..2890413 (-) Length   455 a.a.
NCBI ID   WP_004207917.1    Uniprot ID   A0A084EUB9
Organism   Sphingobium yanoikuyae strain YC-JY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2884046..2895413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS397_RS13670 (GS397_13670) obgE 2884751..2885845 (+) 1095 WP_017499840.1 GTPase ObgE -
  GS397_RS13675 (GS397_13675) proB 2885978..2887111 (+) 1134 WP_159366778.1 glutamate 5-kinase -
  GS397_RS13680 (GS397_13680) - 2887136..2888032 (+) 897 WP_159366779.1 NAD(P)H-binding protein -
  GS397_RS13685 (GS397_13685) - 2888511..2889035 (-) 525 WP_037512407.1 CvpA family protein -
  GS397_RS13690 (GS397_13690) radA 2889046..2890413 (-) 1368 WP_004207917.1 DNA repair protein RadA Machinery gene
  GS397_RS13695 (GS397_13695) - 2890503..2891204 (+) 702 WP_159366780.1 endonuclease/exonuclease/phosphatase family protein -
  GS397_RS13700 (GS397_13700) - 2891778..2894111 (+) 2334 WP_159366781.1 patatin-like protein -
  GS397_RS13705 (GS397_13705) - 2894108..2894605 (+) 498 WP_037512401.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 47763.70 Da        Isoelectric Point: 6.7474

>NTDB_id=411588 GS397_RS13690 WP_004207917.1 2889046..2890413(-) (radA) [Sphingobium yanoikuyae strain YC-JY1]
MAKAKRKFVCQQCGTVSGRWQGQCDDCGEWNSIVEEAAETVFSAKHDLQGGGRAITLIGLDSKVELPARTSTGIAEFDRA
LGGGIVPGSATLIGGDPGIGKSTLLLQAAARVASRGLTVAYISGEEASDQVRLRAQRLGLGNAPVQLASATSVRDILTTL
SEGVPPALLIIDSIQTMHSDLIEGAPGTVSQVRASSQELIKFAKQRGTALILVGHVTKDGSIAGPRVLEHMVDTVLAFEG
ERSHQYRILRAIKNRFGGTDEIGVFSMVAEGLEEVANPSALFLTNRDETVTGATVFPALEGTRPVLVEIQALVVRLSSGA
TPRRAVVGWDSGRLAMILAVLEARCGLSFSTCEVYLNVAGGYRLSDPAADLAVAAALMSALSERPVPADVVLFGEIALSS
EIRPVSHTPLRLRESAKLGFNRAFVPASGADGVKGISVSGFRTLAQLVDQMLGRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=411588 GS397_RS13690 WP_004207917.1 2889046..2890413(-) (radA) [Sphingobium yanoikuyae strain YC-JY1]
ATGGCCAAGGCAAAGCGCAAATTCGTCTGTCAGCAATGCGGCACCGTCTCCGGCCGGTGGCAGGGGCAGTGCGATGACTG
TGGCGAATGGAACAGCATCGTCGAGGAAGCGGCCGAGACCGTCTTTTCCGCCAAGCATGACCTGCAGGGTGGTGGTCGGG
CGATCACGCTCATCGGCCTCGACAGCAAGGTGGAACTGCCCGCGCGCACCAGCACCGGCATCGCCGAGTTCGACCGGGCG
CTGGGCGGCGGCATCGTGCCGGGATCGGCCACGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACCCTGTTATTGCA
GGCGGCGGCGCGGGTCGCCTCGCGCGGGTTGACGGTCGCCTATATCAGCGGCGAGGAAGCGTCGGACCAGGTGCGGCTGC
GCGCCCAGCGGCTGGGCCTCGGCAATGCGCCGGTGCAACTGGCGAGCGCGACATCGGTGCGCGATATCCTGACGACGCTG
AGCGAGGGCGTGCCGCCCGCATTGCTGATCATCGATTCGATCCAGACCATGCATAGCGACCTGATCGAGGGCGCGCCCGG
CACCGTCAGCCAGGTGCGCGCGTCGAGCCAGGAACTGATCAAATTCGCCAAGCAGCGCGGCACCGCGCTGATCCTGGTCG
GCCATGTCACCAAGGATGGCAGCATCGCCGGCCCGCGCGTGCTGGAACATATGGTCGACACGGTGCTGGCGTTCGAGGGC
GAGCGCAGCCATCAATATCGCATCCTGCGCGCAATCAAGAACCGCTTTGGCGGCACCGACGAGATCGGCGTCTTTTCCAT
GGTTGCCGAGGGGCTGGAGGAGGTCGCCAACCCGTCCGCTTTGTTCCTCACCAATCGCGACGAGACGGTGACGGGCGCCA
CCGTCTTCCCCGCGCTCGAAGGAACGCGGCCCGTGCTGGTCGAGATCCAGGCGCTGGTGGTGCGCTTGTCGAGCGGGGCG
ACGCCTCGGCGCGCGGTGGTCGGCTGGGACAGCGGCCGGCTGGCGATGATCCTGGCCGTGCTGGAGGCGCGCTGCGGGCT
CAGCTTCTCGACCTGCGAAGTCTATCTCAATGTCGCGGGCGGCTATCGCCTGTCCGATCCGGCCGCCGATCTGGCCGTCG
CCGCCGCTTTGATGTCGGCCTTGTCGGAACGGCCGGTGCCCGCCGATGTCGTGCTGTTCGGCGAGATTGCGCTGTCGAGC
GAGATCCGCCCCGTCTCGCACACGCCGCTCAGGCTCCGGGAATCGGCGAAACTGGGCTTCAATCGCGCCTTCGTGCCGGC
GTCGGGCGCGGATGGGGTGAAGGGGATTTCGGTCAGCGGCTTCCGCACCCTTGCACAGCTGGTTGACCAGATGCTCGGGC
GCGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084EUB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.403

100

0.481
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464
  radA Streptococcus pneumoniae Rx1

46.053

100

0.462
  radA Streptococcus pneumoniae D39

46.053

100

0.462
  radA Streptococcus pneumoniae R6

46.053

100

0.462
  radA Streptococcus pneumoniae TIGR4

46.053

100

0.462
  radA Streptococcus mitis SK321

45.833

100

0.459

Multiple sequence alignment