Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   GR342_RS07410 Genome accession   NZ_CP047216
Coordinates   1454814..1455125 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain SH89     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1449814..1460125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR342_RS07390 (GR342_07330) ctsE 1450681..1452243 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  GR342_RS07395 (GR342_07335) - 1452236..1452832 (-) 597 WP_002779313.1 CDC27 family protein -
  GR342_RS07400 (GR342_07340) ctsP 1452829..1453425 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  GR342_RS07405 (GR342_07345) ctsD 1453418..1454836 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  GR342_RS07410 (GR342_07350) ctsR 1454814..1455125 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  GR342_RS07415 (GR342_07355) nifJ 1455149..1458709 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  GR342_RS07420 (GR342_07360) - 1458813..1459451 (-) 639 WP_002845619.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=411581 GR342_RS07410 WP_002779316.1 1454814..1455125(-) (ctsR) [Campylobacter coli strain SH89]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=411581 GR342_RS07410 WP_002779316.1 1454814..1455125(-) (ctsR) [Campylobacter coli strain SH89]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment