Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GR342_RS06830 Genome accession   NZ_CP047216
Coordinates   1333626..1334594 (+) Length   322 a.a.
NCBI ID   WP_002814836.1    Uniprot ID   -
Organism   Campylobacter coli strain SH89     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1328626..1339594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR342_RS06805 (GR342_06745) - 1329482..1330207 (-) 726 WP_002806265.1 phosphatidate cytidylyltransferase -
  GR342_RS06810 (GR342_06750) - 1330216..1330554 (-) 339 WP_002777761.1 hypothetical protein -
  GR342_RS06815 (GR342_06755) - 1330556..1331863 (-) 1308 WP_250414991.1 NFACT family protein -
  GR342_RS06820 (GR342_06760) - 1331926..1332501 (+) 576 WP_250404851.1 molybdenum cofactor guanylyltransferase -
  GR342_RS06825 (GR342_06765) - 1332498..1333493 (+) 996 WP_002814837.1 phospholipase A -
  GR342_RS06830 (GR342_06770) ceuB 1333626..1334594 (+) 969 WP_002814836.1 ABC transporter permease Machinery gene
  GR342_RS06835 (GR342_06775) - 1334587..1335525 (+) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  GR342_RS06840 (GR342_06780) - 1335522..1336277 (+) 756 WP_002785724.1 ATP-binding cassette domain-containing protein -
  GR342_RS06845 (GR342_06785) - 1336292..1337281 (+) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  GR342_RS06850 (GR342_06790) - 1337447..1338079 (+) 633 WP_233928436.1 hypothetical protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35549.41 Da        Isoelectric Point: 9.5069

>NTDB_id=411574 GR342_RS06830 WP_002814836.1 1333626..1334594(+) (ceuB) [Campylobacter coli strain SH89]
MLFKHLFSLNILLILLVVFGIISLFIGIIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=411574 GR342_RS06830 WP_002814836.1 1333626..1334594(+) (ceuB) [Campylobacter coli strain SH89]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GATTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAACTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

88.82

100

0.888

Multiple sequence alignment