Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | GR342_RS05740 | Genome accession | NZ_CP047216 |
| Coordinates | 1123376..1124329 (+) | Length | 317 a.a. |
| NCBI ID | WP_250414624.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain SH89 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1118376..1129329
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GR342_RS05710 (GR342_05650) | wecB | 1118457..1119578 (-) | 1122 | WP_250414595.1 | UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) | - |
| GR342_RS05715 (GR342_05655) | - | 1119662..1120108 (-) | 447 | WP_002782980.1 | acyltransferase | - |
| GR342_RS05720 (GR342_05660) | - | 1120098..1120514 (-) | 417 | WP_002782982.1 | FdtA/QdtA family cupin domain-containing protein | - |
| GR342_RS05725 (GR342_05665) | rfbB | 1120567..1121589 (-) | 1023 | WP_072239296.1 | dTDP-glucose 4,6-dehydratase | - |
| GR342_RS05730 (GR342_05670) | rfbA | 1121593..1122471 (-) | 879 | WP_233907589.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| GR342_RS05735 (GR342_05675) | - | 1122481..1123317 (-) | 837 | WP_233922038.1 | glycosyltransferase family 2 protein | - |
| GR342_RS05740 (GR342_05680) | waaF | 1123376..1124329 (+) | 954 | WP_250414624.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| GR342_RS05745 (GR342_05685) | - | 1124336..1125095 (-) | 760 | Protein_1107 | glycosyltransferase family 25 protein | - |
| GR342_RS05750 (GR342_05690) | gmhA | 1125095..1125655 (-) | 561 | WP_004291468.1 | D-sedoheptulose 7-phosphate isomerase | - |
| GR342_RS05755 (GR342_05695) | rfaE1 | 1125652..1127037 (-) | 1386 | WP_002786305.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| GR342_RS05760 (GR342_05700) | rfaD | 1127030..1127983 (-) | 954 | WP_002780616.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| GR342_RS05765 (GR342_05705) | - | 1127980..1128501 (-) | 522 | WP_002810022.1 | HAD family hydrolase | - |
| GR342_RS05770 (GR342_05710) | - | 1128619..1128918 (+) | 300 | WP_002777238.1 | cytochrome c | - |
| GR342_RS05775 (GR342_05715) | - | 1128948..1129148 (-) | 201 | WP_002812791.1 | cbb3-type cytochrome oxidase assembly protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36473.11 Da Isoelectric Point: 10.2529
>NTDB_id=411568 GR342_RS05740 WP_250414624.1 1123376..1124329(+) (waaF) [Campylobacter coli strain SH89]
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKAKQRYFFNKYDFKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKAKQRYFFNKYDFKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN
Nucleotide
Download Length: 954 bp
>NTDB_id=411568 GR342_RS05740 WP_250414624.1 1123376..1124329(+) (waaF) [Campylobacter coli strain SH89]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCTTCCAAGATCATTTTACACATCCTTAAGGCAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCTTCCAAGATCATTTTACACATCCTTAAGGCAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
87.58 |
99.054 |
0.868 |