Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   VAA_RS12590 Genome accession   NC_015633
Coordinates   2763294..2764277 (-) Length   327 a.a.
NCBI ID   WP_013857714.1    Uniprot ID   -
Organism   Vibrio anguillarum 775     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2758294..2769277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA_RS12580 (VAA_00698) cysM 2759456..2760346 (+) 891 WP_026027976.1 cysteine synthase CysM -
  VAA_RS12585 (VAA_00697) mutS 2760589..2763177 (+) 2589 WP_029189955.1 DNA mismatch repair protein MutS -
  VAA_RS12590 (VAA_00696) rpoS 2763294..2764277 (-) 984 WP_013857714.1 RNA polymerase sigma factor RpoS Regulator
  VAA_RS12595 (VAA_00695) nlpD 2764350..2765282 (-) 933 WP_041769244.1 murein hydrolase activator NlpD -
  VAA_RS12600 (VAA_00694) - 2765288..2765914 (-) 627 WP_013857716.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  VAA_RS12605 (VAA_00693) surE 2765914..2766660 (-) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  VAA_RS12610 (VAA_00692) truD 2766673..2767770 (-) 1098 WP_013857717.1 tRNA pseudouridine(13) synthase TruD -
  VAA_RS12615 (VAA_00691) ispF 2767925..2768410 (-) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  VAA_RS12620 (VAA_00690) ispD 2768403..2769134 (-) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37663.41 Da        Isoelectric Point: 4.4722

>NTDB_id=41156 VAA_RS12590 WP_013857714.1 2763294..2764277(-) (rpoS) [Vibrio anguillarum 775]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDTNNSDP
EISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEA
LFNVEYD

Nucleotide


Download         Length: 984 bp        

>NTDB_id=41156 VAA_RS12590 WP_013857714.1 2763294..2764277(-) (rpoS) [Vibrio anguillarum 775]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGGTTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCATTGAAGAGGGTAATTTAGGCTTGATCCGTGCGGTAGAAAAATTTGATCCAGAACGTGGCT
TTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAACCAAACGCGCACTATCCGT
TTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCAGAAGTTAGATCATGAACC
TACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTACGTCTGAACGAGCGTATCA
GTTCCGTTGATACACCGATTGGCGGCGATGGTGACAAAGCACTACTCGATATCATCCCAGATACGAACAACTCTGATCCT
GAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTGAACCCAAAACAAAAAGAGGT
ACTTGCACGCCGTTTTGGACTATTAGGTTATGAACCGTCCACCTTAGAAGAAGTCGGGCGCGAAATTAACTTAACCCGTG
AACGAGTTCGTCAAATTCAAGTGGAAGGTCTACGTCGTTTGAGAGAGATCTTGGTTAAACAAGGCTTGAACATGGAAGCG
CTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

85.03

100

0.869

Multiple sequence alignment