Detailed information NTG0411558

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H5C78_RS17610
• Genome accession: NZ_CP059917
• Coordinates: 3645347..3646339 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 64.1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3640347..3651339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5C78_RS17585 (H5C78_17585)	ygbN	3641003..3642367 (+)	1365	WP_182917227.1	GntP family transporter	-
H5C78_RS17590 (H5C78_17590)	-	3642405..3642641 (-)	237	WP_000562976.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
H5C78_RS17595 (H5C78_17595)	-	3642652..3644079 (-)	1428	WP_025491880.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
H5C78_RS17600 (H5C78_17600)	-	3644079..3644672 (-)	594	WP_000767730.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
H5C78_RS17605 (H5C78_17605)	-	3644819..3645226 (+)	408	WP_001208064.1	MarR family transcriptional regulator	-
H5C78_RS17610 (H5C78_17610)	rpoS	3645347..3646339 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H5C78_RS17615 (H5C78_17615)	nlpD	3646402..3647496 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H5C78_RS17620 (H5C78_17620)	pcm	3647681..3648307 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
H5C78_RS17625 (H5C78_17625)	surE	3648301..3649062 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H5C78_RS17630 (H5C78_17630)	truD	3649043..3650092 (-)	1050	WP_000568955.1	tRNA pseudouridine(13) synthase TruD	-
H5C78_RS17635 (H5C78_17635)	ispF	3650089..3650568 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H5C78_RS17640 (H5C78_17640)	ispD	3650568..3651278 (-)	711	WP_000246133.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=411558 H5C78_RS17610 WP_000081550.1 3645347..3646339(-) (rpoS) [Escherichia coli strain 64.1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=411558 H5C78_RS17610 WP_000081550.1 3645347..3646339(-) (rpoS) [Escherichia coli strain 64.1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715