Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   GR341_RS07495 Genome accession   NZ_CP047214
Coordinates   1444054..1445235 (-) Length   393 a.a.
NCBI ID   WP_002822415.1    Uniprot ID   -
Organism   Campylobacter coli strain QL_1_15     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1439054..1450235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR341_RS07470 (GR341_07460) fliL 1440190..1440726 (+) 537 WP_002779164.1 flagellar basal body-associated protein FliL -
  GR341_RS07475 (GR341_07465) acpS 1440726..1441073 (+) 348 WP_002798777.1 holo-ACP synthase -
  GR341_RS07480 (GR341_07470) - 1441076..1441498 (-) 423 WP_002800011.1 hypothetical protein -
  GR341_RS07485 (GR341_07475) - 1441495..1442865 (-) 1371 WP_002783822.1 cytochrome P450 -
  GR341_RS07490 (GR341_07480) - 1442862..1443983 (-) 1122 WP_002787825.1 hypothetical protein -
  GR341_RS07495 (GR341_07485) kpsS 1444054..1445235 (-) 1182 WP_002822415.1 capsule biosynthesis protein Regulator
  GR341_RS07500 (GR341_07490) - 1445232..1447259 (-) 2028 WP_249614036.1 capsular polysaccharide biosynthesis protein -
  GR341_RS07505 (GR341_07495) - 1447447..1448055 (-) 609 WP_052777868.1 HAD hydrolase-like protein -
  GR341_RS07510 (GR341_07500) - 1448065..1449615 (-) 1551 WP_052777867.1 hypothetical protein -

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 46321.05 Da        Isoelectric Point: 10.0604

>NTDB_id=411551 GR341_RS07495 WP_002822415.1 1444054..1445235(-) (kpsS) [Campylobacter coli strain QL_1_15]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYESFFKEKKI
DAIVMYNDCRLIHAKAIKVAKGLGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLFPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLIFKHHPMDRGYRNYSKLINGLSQKYHVEGRIFYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=411551 GR341_RS07495 WP_002822415.1 1444054..1445235(-) (kpsS) [Campylobacter coli strain QL_1_15]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGGACTTTTTT
TCACCGCCTTGCCATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTTTATGAGAGCTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGGGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATTTCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTTA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTAT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGGGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTCTATGTACATGATACTTATTTGCCTACTCTTTTAAAAAATGCTTTAGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGAAATGCATTTTACAATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.5

99.746

0.873


Multiple sequence alignment