Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H5C78_RS14165 Genome accession   NZ_CP059917
Coordinates   2898980..2900407 (+) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain 64.1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2893980..2905407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5C78_RS14125 (H5C78_14125) yeeW 2894164..2894358 (+) 195 WP_000988600.1 DUF5983 family protein -
  H5C78_RS14130 (H5C78_14130) - 2894404..2894484 (+) 81 Protein_2809 hypothetical protein -
  H5C78_RS27410 (H5C78_14135) - 2894773..2894946 (-) 174 WP_032082634.1 transposase domain-containing protein -
  H5C78_RS14140 (H5C78_14140) - 2894973..2895155 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H5C78_RS14145 (H5C78_14145) tmaR 2895256..2895585 (-) 330 WP_000450409.1 DUF496 family protein -
  H5C78_RS14150 (H5C78_14150) yeeA 2895757..2896815 (-) 1059 WP_001200905.1 FUSC family protein -
  H5C78_RS14155 (H5C78_14155) sbmC 2897013..2897486 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  H5C78_RS14160 (H5C78_14160) dacD 2897605..2898771 (-) 1167 WP_000830162.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H5C78_RS14165 (H5C78_14165) sbcB 2898980..2900407 (+) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  H5C78_RS14170 (H5C78_14170) tsuB 2900450..2900677 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H5C78_RS14175 (H5C78_14175) tsuA 2900691..2901757 (-) 1067 Protein_2818 thiosulfate utilization transporter TsuA/YeeE -
  H5C78_RS14180 (H5C78_14180) plaP 2901936..2903294 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H5C78_RS14185 (H5C78_14185) yoeI 2903284..2903346 (-) 63 WP_010723108.1 membrane protein YoeI -
  H5C78_RS14190 (H5C78_14190) yeeY 2903561..2904490 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H5C78_RS14195 (H5C78_14195) yeeZ 2904536..2905360 (-) 825 WP_182917215.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=411545 H5C78_RS14165 WP_000980592.1 2898980..2900407(+) (sbcB) [Escherichia coli strain 64.1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=411545 H5C78_RS14165 WP_000980592.1 2898980..2900407(+) (sbcB) [Escherichia coli strain 64.1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGTGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583