Detailed information NTG0411543

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: GR341_RS06075
• Genome accession: NZ_CP047214
• Coordinates: 1166019..1166963 (+)
• Length: 314 a.a.
• NCBI ID: WP_162284669.1
• Uniprot ID: -
• Organism: Campylobacter coli strain QL_1_15
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1161019..1171963

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GR341_RS06055 (GR341_06060)	-	1161656..1162594 (-)	939	WP_002844801.1	NAD-dependent epimerase/dehydratase family protein	-
GR341_RS06060 (GR341_06065)	gmd	1162587..1163726 (-)	1140	WP_002844800.1	GDP-mannose 4,6-dehydratase	-
GR341_RS06065 (GR341_06070)	-	1163727..1165095 (-)	1369	Protein_1168	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
GR341_RS06070 (GR341_06075)	-	1165138..1165959 (-)	822	WP_002844798.1	glycosyltransferase family 2 protein	-
GR341_RS06075 (GR341_06080)	waaF	1166019..1166963 (+)	945	WP_162284669.1	lipopolysaccharide heptosyltransferase II	Regulator
GR341_RS06080 (GR341_06085)	-	1166956..1167717 (-)	762	WP_277715224.1	glycosyltransferase family 25 protein	-
GR341_RS06085 (GR341_06090)	gmhA	1167717..1168277 (-)	561	WP_052778106.1	D-sedoheptulose 7-phosphate isomerase	-
GR341_RS06090 (GR341_06095)	rfaE1	1168274..1169659 (-)	1386	WP_002831599.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
GR341_RS06095 (GR341_06100)	rfaD	1169652..1170605 (-)	954	WP_002831601.1	ADP-glyceromanno-heptose 6-epimerase	-
GR341_RS06100 (GR341_06105)	-	1170602..1171165 (-)	564	WP_002820231.1	HAD family hydrolase	-
GR341_RS06105 (GR341_06110)	-	1171242..1171541 (+)	300	WP_002777238.1	cytochrome c	-
GR341_RS06110 (GR341_06115)	-	1171571..1171771 (-)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36040.60 Da
• Isoelectric Point: 10.3664

>NTDB_id=411543 GR341_RS06075 WP_162284669.1 1166019..1166963(+) (waaF) [Campylobacter coli strain QL_1_15]
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT

Nucleotide

• Length: 945 bp

>NTDB_id=411543 GR341_RS06075 WP_162284669.1 1166019..1166963(+) (waaF) [Campylobacter coli strain QL_1_15]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCTCTTTCCTCTAAGATCATTTTGCATATCCTTAAGGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (108-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	83.067	99.682	0.828