Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VAA_RS12455 Genome accession   NC_015633
Coordinates   2737328..2737846 (-) Length   172 a.a.
NCBI ID   WP_010319518.1    Uniprot ID   A0A233HL62
Organism   Vibrio anguillarum 775     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2732328..2742846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA_RS12430 (VAA_00722) rimM 2732359..2732913 (-) 555 WP_013857691.1 ribosome maturation factor RimM -
  VAA_RS12435 (VAA_00721) rpsP 2732943..2733191 (-) 249 WP_010319522.1 30S ribosomal protein S16 -
  VAA_RS12440 (VAA_00720) ffh 2733406..2734788 (-) 1383 WP_013857692.1 signal recognition particle protein -
  VAA_RS12445 (VAA_00719) - 2735091..2735885 (+) 795 WP_026027563.1 inner membrane protein YpjD -
  VAA_RS12450 - 2735969..2737244 (+) 1276 Protein_2423 HlyC/CorC family transporter -
  VAA_RS12455 (VAA_00716) luxS 2737328..2737846 (-) 519 WP_010319518.1 S-ribosylhomocysteine lyase Regulator
  VAA_RS12460 (VAA_00715) gshA 2737911..2739476 (-) 1566 WP_029189845.1 glutamate--cysteine ligase -
  VAA_RS12465 (VAA_00714) - 2739579..2742434 (-) 2856 WP_013857697.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.76 Da        Isoelectric Point: 5.2114

>NTDB_id=41153 VAA_RS12455 WP_010319518.1 2737328..2737846(-) (luxS) [Vibrio anguillarum 775]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGHDVEIIDISP
MGCRTGFYMSLIGAPTEAQVAQAWLAAMHDVLKVESQDQIPELNEYQCGTASMHSLTEAKEIAQAIITAGIAVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=41153 VAA_RS12455 WP_010319518.1 2737328..2737846(-) (luxS) [Vibrio anguillarum 775]
ATGCCATTACTCGACAGTTTTACTGTAGATCACACTCGTATGCATGCGCCTGCGGTACGTGTGGCAAAAAATATGCAGAC
GCCTAAAGGGGATACAATCACCGTATTTGATCTCCGTTTTACTGCTCCAAACAAAGATATTCTTTCAGAAAAAGGGATCC
ACACTTTAGAACATTTATATGCTGGCTTTATGCGCGCGCACTTAAATGGTCATGATGTAGAAATCATCGACATCTCACCT
ATGGGCTGCCGCACAGGTTTTTACATGAGTTTGATTGGCGCGCCAACAGAAGCGCAAGTGGCGCAAGCGTGGTTAGCGGC
GATGCATGATGTGCTAAAAGTAGAGAGCCAAGATCAGATCCCTGAACTAAACGAATACCAATGTGGTACAGCCTCAATGC
ACTCGTTAACAGAAGCTAAAGAGATTGCTCAAGCGATTATCACAGCAGGTATTGCGGTGAATAAAAATGATGAGCTTGCT
TTACCTGAGTCGATGCTCAAAGAGCTGAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment