Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   GR339_RS05640 Genome accession   NZ_CP047212
Coordinates   1111985..1112431 (-) Length   148 a.a.
NCBI ID   WP_002776437.1    Uniprot ID   A0A0Q2LSM9
Organism   Campylobacter coli strain JZ_1_79     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1106985..1117431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS05625 (GR339_05575) - 1108791..1109399 (+) 609 WP_002781606.1 gamma-glutamyl-CDP-amidate hydrolase -
  GR339_RS05630 (GR339_05580) - 1109396..1110166 (+) 771 WP_002781608.1 phosphocholine cytidylyltransferase family protein -
  GR339_RS05635 (GR339_05585) - 1110150..1111988 (-) 1839 WP_250406324.1 primosomal protein N' -
  GR339_RS05640 (GR339_05590) Cj0683 1111985..1112431 (-) 447 WP_002776437.1 type II secretion system protein Machinery gene
  GR339_RS05645 (GR339_05595) - 1112428..1112673 (-) 246 WP_002776428.1 hypothetical protein -
  GR339_RS05650 (GR339_05600) - 1112663..1112893 (-) 231 WP_002776426.1 hypothetical protein -
  GR339_RS05655 (GR339_05605) uvrB 1113047..1115020 (+) 1974 WP_002776424.1 excinuclease ABC subunit UvrB -
  GR339_RS05660 (GR339_05610) - 1115055..1116479 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17302.19 Da        Isoelectric Point: 8.4538

>NTDB_id=411529 GR339_RS05640 WP_002776437.1 1111985..1112431(-) (Cj0683) [Campylobacter coli strain JZ_1_79]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=411529 GR339_RS05640 WP_002776437.1 1111985..1112431(-) (Cj0683) [Campylobacter coli strain JZ_1_79]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCCTT
TGCCAATCAAAATAAAAACGATGCGAAACTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCCCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2LSM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.108

100

0.581

Multiple sequence alignment