Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   GR339_RS01945 Genome accession   NZ_CP047212
Coordinates   381706..382890 (+) Length   394 a.a.
NCBI ID   WP_250429437.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_79     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 376706..387890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS01930 - 377209..378696 (+) 1488 WP_250407092.1 hypothetical protein -
  GR339_RS01935 (GR339_01915) - 378729..379730 (+) 1002 WP_088569591.1 glycosyltransferase -
  GR339_RS01940 (GR339_01920) - 379724..381709 (+) 1986 WP_250429439.1 capsular polysaccharide biosynthesis protein -
  GR339_RS01945 (GR339_01925) kpsS 381706..382890 (+) 1185 WP_250429437.1 capsule biosynthesis protein Regulator
  GR339_RS01950 (GR339_01930) - 382957..384078 (+) 1122 WP_250429435.1 DUF829 domain-containing protein -
  GR339_RS01955 (GR339_01935) - 384075..385445 (+) 1371 WP_002838960.1 cytochrome P450 -
  GR339_RS01960 (GR339_01940) - 385442..385864 (+) 423 WP_002779166.1 hypothetical protein -
  GR339_RS01965 (GR339_01945) acpS 385867..386214 (-) 348 WP_002808698.1 holo-ACP synthase -
  GR339_RS01970 (GR339_01950) fliL 386214..386750 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46630.37 Da        Isoelectric Point: 9.9737

>NTDB_id=411519 GR339_RS01945 WP_250429437.1 381706..382890(+) (kpsS) [Campylobacter coli strain JZ_1_79]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKLTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKRALGCITINS
TVGLSAILESCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPSLVLNFKNYLLNTNQFNGNFYKNSFLSQ

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=411519 GR339_RS01945 WP_250429437.1 381706..382890(+) (kpsS) [Campylobacter coli strain JZ_1_79]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGATGAAAAAGATCTAGAAAATTTCTATGAAAATTTTTTCAAAGAGAAAAAAATA
GATGCTATTGTGATGTATAATGATTGTCGTTTGATTCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCTTCTTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGCTTTAAATTT
ATGGCCTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CCTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATATCTTTATAAACTCACAGAAAAAAAACTTA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTGATAAATGAGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCATGATACTTACTTGCCTACTCTTTTAAAAAGGGCTTTAGGTTGTATCACGATTAATTCT
ACAGTGGGTTTAAGCGCTATTTTGGAGAGCTGTCCTACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTAGC
TTATCCTAAAAAGCTCCAATTTTTTTGGCGTGAAGCTCATGCTTACAAACCCAATCCTAGCTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAATGGCAATTTTTACAAAAATTCTTTTTTAAGTCAATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.563

100

0.876

Multiple sequence alignment