Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GR340_RS07620 Genome accession   NZ_CP047197
Coordinates   1440578..1441546 (+) Length   322 a.a.
NCBI ID   WP_233908822.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_95     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1435578..1446546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS07595 (GR340_07470) - 1436435..1437160 (-) 726 WP_002812238.1 phosphatidate cytidylyltransferase -
  GR340_RS07600 (GR340_07475) - 1437169..1437507 (-) 339 WP_002777761.1 hypothetical protein -
  GR340_RS07605 (GR340_07480) - 1437509..1438816 (-) 1308 WP_002823835.1 NFACT family protein -
  GR340_RS07610 (GR340_07485) - 1438878..1439453 (+) 576 WP_277737362.1 molybdenum cofactor guanylyltransferase -
  GR340_RS07615 (GR340_07490) - 1439450..1440445 (+) 996 WP_002783923.1 phospholipase A -
  GR340_RS07620 (GR340_07495) ceuB 1440578..1441546 (+) 969 WP_233908822.1 ABC transporter permease Machinery gene
  GR340_RS07625 (GR340_07500) - 1441539..1442477 (+) 939 WP_002785725.1 iron chelate uptake ABC transporter family permease subunit -
  GR340_RS07630 (GR340_07505) - 1442474..1443229 (+) 756 WP_057043902.1 ATP-binding cassette domain-containing protein -
  GR340_RS07635 (GR340_07510) - 1443244..1444233 (+) 990 WP_277737363.1 siderophore ABC transporter substrate-binding protein -
  GR340_RS07640 (GR340_07515) - 1444399..1445031 (+) 633 WP_002780519.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35547.38 Da        Isoelectric Point: 9.5069

>NTDB_id=411462 GR340_RS07620 WP_233908822.1 1440578..1441546(+) (ceuB) [Campylobacter coli strain JZ_1_95]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILTYFLAHKITIAGIGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=411462 GR340_RS07620 WP_233908822.1 1440578..1441546(+) (ceuB) [Campylobacter coli strain JZ_1_95]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTACTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATAGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGGGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

88.509

100

0.885

Multiple sequence alignment