Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   GR340_RS06510 Genome accession   NZ_CP047197
Coordinates   1223599..1224543 (+) Length   314 a.a.
NCBI ID   WP_277737313.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_95     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1213942..1229354 1223599..1224543 within 0


Gene organization within MGE regions


Location: 1213942..1229354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS06465 (GR340_06355) rfbG 1213942..1215015 (-) 1074 WP_002844810.1 CDP-glucose 4,6-dehydratase -
  GR340_RS06470 (GR340_06360) rfbF 1215019..1215834 (-) 816 WP_002844809.1 glucose-1-phosphate cytidylyltransferase -
  GR340_RS06475 (GR340_06365) - 1215831..1216823 (-) 993 WP_277737310.1 alpha-1,2-fucosyltransferase -
  GR340_RS06480 (GR340_06370) - 1216816..1217835 (-) 1020 WP_277737311.1 glycosyltransferase family 10 -
  GR340_RS06485 (GR340_06375) - 1218213..1219382 (-) 1170 WP_277737312.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  GR340_RS06490 (GR340_06380) - 1219375..1220313 (-) 939 WP_002844801.1 NAD-dependent epimerase/dehydratase family protein -
  GR340_RS06495 (GR340_06385) gmd 1220306..1221454 (-) 1149 WP_250405453.1 GDP-mannose 4,6-dehydratase -
  GR340_RS06500 (GR340_06390) - 1221387..1222676 (-) 1290 WP_250405455.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  GR340_RS06505 (GR340_06395) - 1222719..1223540 (-) 822 WP_215460502.1 glycosyltransferase family 2 protein -
  GR340_RS06510 (GR340_06400) waaF 1223599..1224543 (+) 945 WP_277737313.1 lipopolysaccharide heptosyltransferase II Regulator
  GR340_RS06515 (GR340_06405) - 1224536..1225300 (-) 765 WP_250426857.1 glycosyltransferase family 25 protein -
  GR340_RS06520 (GR340_06410) gmhA 1225300..1225860 (-) 561 WP_233916286.1 D-sedoheptulose 7-phosphate isomerase -
  GR340_RS06525 (GR340_06415) rfaE1 1225857..1227242 (-) 1386 WP_250426858.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  GR340_RS06530 (GR340_06420) rfaD 1227235..1228188 (-) 954 WP_072238544.1 ADP-glyceromanno-heptose 6-epimerase -
  GR340_RS06535 (GR340_06425) - 1228185..1228706 (-) 522 WP_233908872.1 HAD family hydrolase -
  GR340_RS06540 (GR340_06430) - 1228825..1229124 (+) 300 WP_002777238.1 cytochrome c -
  GR340_RS06545 (GR340_06435) - 1229154..1229354 (-) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 36059.61 Da        Isoelectric Point: 10.2686

>NTDB_id=411456 GR340_RS06510 WP_277737313.1 1223599..1224543(+) (waaF) [Campylobacter coli strain JZ_1_95]
MKIFIHLPTWLGDAVMASSALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKAKQRYFFNKYDFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKMLCQNIIFCDIFITNDS
GTMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT

Nucleotide


Download         Length: 945 bp        

>NTDB_id=411456 GR340_RS06510 WP_277737313.1 1223599..1224543(+) (waaF) [Campylobacter coli strain JZ_1_95]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCGGTTATGGCTTCATCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCTTCCAAGATCATTTTACACATCCTTAAGGCAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGACATCAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCGGGCAAGGCAGAACAAGAACTTTGCGATGAAATTTTTCATATATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACCATCAAAATGCTTTGTCAAAATATCATTTTTTGTGATATTTTCATCACAAATGATAGT
GGCACTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(105-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

82.748

99.682

0.825

Multiple sequence alignment