Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   GR340_RS03715 Genome accession   NZ_CP047197
Coordinates   702016..702462 (+) Length   148 a.a.
NCBI ID   WP_002776437.1    Uniprot ID   A0A0Q2LSM9
Organism   Campylobacter coli strain JZ_1_95     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 697016..707462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS03695 (GR340_03635) - 697968..699392 (+) 1425 WP_277737550.1 anaerobic C4-dicarboxylate transporter -
  GR340_RS03700 (GR340_03640) uvrB 699427..701400 (-) 1974 WP_277737551.1 excinuclease ABC subunit UvrB -
  GR340_RS03705 (GR340_03645) - 701554..701784 (+) 231 WP_002776426.1 hypothetical protein -
  GR340_RS03710 (GR340_03650) - 701774..702019 (+) 246 WP_002776428.1 hypothetical protein -
  GR340_RS03715 (GR340_03655) Cj0683 702016..702462 (+) 447 WP_002776437.1 type II secretion system protein Machinery gene
  GR340_RS03720 (GR340_03660) - 702459..704297 (+) 1839 WP_233908780.1 primosomal protein N' -
  GR340_RS03725 (GR340_03665) - 704281..705051 (-) 771 WP_002781608.1 phosphocholine cytidylyltransferase family protein -
  GR340_RS03730 (GR340_03670) - 705048..705656 (-) 609 WP_277737552.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17302.19 Da        Isoelectric Point: 8.4538

>NTDB_id=411451 GR340_RS03715 WP_002776437.1 702016..702462(+) (Cj0683) [Campylobacter coli strain JZ_1_95]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=411451 GR340_RS03715 WP_002776437.1 702016..702462(+) (Cj0683) [Campylobacter coli strain JZ_1_95]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2LSM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.108

100

0.581

Multiple sequence alignment