Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   GQY29_RS09380 Genome accession   NZ_CP047191
Coordinates   1787685..1787978 (-) Length   97 a.a.
NCBI ID   WP_134973176.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EU01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1782685..1792978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQY29_RS09360 (GQY29_09360) - 1783156..1783716 (-) 561 WP_011680991.1 LemA family protein -
  GQY29_RS09365 (GQY29_09365) - 1783833..1784825 (-) 993 WP_224103283.1 DNA/RNA non-specific endonuclease -
  GQY29_RS09370 (GQY29_09370) - 1785096..1785983 (-) 888 Protein_1753 Rpn family recombination-promoting nuclease/putative transposase -
  GQY29_RS09375 (GQY29_09375) - 1786062..1787663 (-) 1602 WP_159341080.1 type I restriction-modification system subunit M -
  GQY29_RS09380 (GQY29_09380) HI0659 1787685..1787978 (-) 294 WP_134973176.1 helix-turn-helix transcriptional regulator Machinery gene
  GQY29_RS09385 (GQY29_09385) - 1787968..1788218 (-) 251 Protein_1756 type II toxin-antitoxin system RelE/ParE family toxin -
  GQY29_RS09390 (GQY29_09390) - 1788441..1789625 (-) 1185 WP_224103284.1 restriction endonuclease subunit S -
  GQY29_RS09395 (GQY29_09395) - 1789734..1791590 (-) 1857 WP_116920185.1 ATP-binding protein -
  GQY29_RS09400 (GQY29_09400) - 1791596..1792591 (-) 996 WP_046206426.1 SIR2 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10774.49 Da        Isoelectric Point: 5.8962

>NTDB_id=411416 GQY29_RS09380 WP_134973176.1 1787685..1787978(-) (HI0659) [Streptococcus thermophilus strain EU01]
MKNSAIGSNWKDVRSELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQERV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=411416 GQY29_RS09380 WP_134973176.1 1787685..1787978(-) (HI0659) [Streptococcus thermophilus strain EU01]
ATGAAGAATAGTGCCATCGGTAGCAATTGGAAAGATGTGAGATCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TCTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACATGAAAAGGGCATTAGTCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGATACGGTTTTGAAAGTCTTA
GCTAGTCTGGGCAAGACTCTCGCTGTCGTCCCACTGGAACAAGAAAGGGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment