Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H3V39_RS22850 Genome accession   NZ_CP059898
Coordinates   5241520..5242578 (+) Length   352 a.a.
NCBI ID   WP_206978336.1    Uniprot ID   -
Organism   Streptomyces sp. M54     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5236520..5247578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3V39_RS22835 (H3V39_22830) - 5237888..5239504 (+) 1617 WP_030120362.1 ABC transporter substrate-binding protein -
  H3V39_RS22840 (H3V39_22835) - 5239633..5240562 (+) 930 WP_030112226.1 ABC transporter permease -
  H3V39_RS22845 (H3V39_22840) - 5240555..5241508 (+) 954 WP_030112227.1 ABC transporter permease -
  H3V39_RS22850 (H3V39_22845) amiE 5241520..5242578 (+) 1059 WP_206978336.1 ABC transporter ATP-binding protein Regulator
  H3V39_RS22855 (H3V39_22850) - 5242571..5243713 (+) 1143 WP_206978337.1 ABC transporter ATP-binding protein -
  H3V39_RS22860 (H3V39_22855) - 5243877..5245511 (+) 1635 WP_043246340.1 ABC transporter substrate-binding protein -
  H3V39_RS22865 (H3V39_22860) - 5245650..5246573 (+) 924 WP_030112234.1 ABC transporter permease -
  H3V39_RS22870 (H3V39_22865) - 5246566..5247543 (+) 978 WP_030112235.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38166.10 Da        Isoelectric Point: 6.5871

>NTDB_id=411399 H3V39_RS22850 WP_206978336.1 5241520..5242578(+) (amiE) [Streptomyces sp. M54]
MTTIDKTAHVPAPRESVSGDGPLLDVRDLHVEFHTRDGVAKAVNGVNYTVSAGETLAVLGESGSGKSVTAQTIMGILDMP
PGKITQGEILFRGQDMLKMSNEERRKIRGRKIAMIFQDALSSLNPVLTVGYQLGEMFRVHQGLSRKDAKAKSIELMDQVK
IPAAAARISDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVGELYSRPAHPYTKGLLDSIPRLDQKGQELYAIKGLPPNLTRIPAGCAFSPRCPKAQDICRT
EVPPLAPVTEPDGAELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=411399 H3V39_RS22850 WP_206978336.1 5241520..5242578(+) (amiE) [Streptomyces sp. M54]
GTGACCACCATCGACAAGACGGCTCACGTTCCCGCACCGCGGGAGTCCGTGAGTGGCGACGGTCCACTGCTCGACGTCCG
TGACCTGCACGTGGAGTTCCACACCCGCGACGGTGTGGCCAAGGCGGTCAACGGTGTGAACTACACCGTCAGCGCCGGCG
AGACCCTCGCGGTGCTGGGCGAGTCCGGCTCCGGCAAGTCCGTGACCGCGCAGACCATCATGGGCATCCTCGACATGCCG
CCCGGGAAGATCACGCAGGGCGAGATCCTCTTCCGCGGCCAGGACATGCTGAAGATGTCCAACGAGGAGCGCCGGAAGAT
CCGCGGCCGCAAGATCGCGATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCGGTCCTCACCGTCGGCTACCAGCTCG
GCGAGATGTTCCGGGTCCACCAGGGCCTGTCCCGCAAGGACGCCAAGGCCAAGTCCATCGAGCTGATGGACCAGGTCAAG
ATCCCCGCCGCCGCGGCCCGGATCTCGGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCAT
GGCGCTGGCCCTGGAGCCGGACCTGATCATCGCGGACGAGCCGACCACCGCGCTCGACGTGACGGTGCAGGCCCAGGTCA
TGGACCTGCTGGCCGAGCTGCAGCGCGAGTACAACATGGGTCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTGGCGGACAAGATCGCCGTGATGTACGCGGGGCGGATCGTGGAGACGGCCCCGGTCGGCGAGCTGTACAGCCGCCCGGC
CCACCCGTACACCAAGGGTCTGCTGGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTGTACGCGATCAAGGGCC
TCCCGCCCAACCTGACGCGTATCCCCGCGGGCTGCGCCTTCAGCCCCCGCTGCCCCAAGGCACAGGACATCTGCCGTACC
GAGGTTCCGCCGCTCGCCCCGGTGACCGAGCCGGACGGCGCCGAGCTGGTCGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.318

89.205

0.449
  amiE Streptococcus thermophilus LMG 18311

49.682

89.205

0.443
  amiE Streptococcus thermophilus LMD-9

49.682

89.205

0.443
  oppD Streptococcus mutans UA159

48.052

87.5

0.42

Multiple sequence alignment