Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GQY29_RS05315 Genome accession   NZ_CP047191
Coordinates   984075..984806 (+) Length   243 a.a.
NCBI ID   WP_023909892.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EU01     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 979075..989806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQY29_RS05290 (GQY29_05290) - 979179..981278 (+) 2100 WP_011681535.1 ATP-dependent Clp protease ATP-binding subunit -
  GQY29_RS11030 - 981718..981843 (+) 126 WP_011681534.1 hypothetical protein -
  GQY29_RS05295 (GQY29_05295) - 981862..982497 (+) 636 WP_023909894.1 DUF4230 domain-containing protein -
  GQY29_RS05300 (GQY29_05300) - 982515..983243 (+) 729 WP_023909893.1 hypothetical protein -
  GQY29_RS05305 (GQY29_05305) - 983295..983594 (-) 300 WP_014621895.1 hypothetical protein -
  GQY29_RS05310 (GQY29_05310) - 983591..984010 (-) 420 WP_014621894.1 HIT family protein -
  GQY29_RS05315 (GQY29_05315) pptA 984075..984806 (+) 732 WP_023909892.1 ABC transporter ATP-binding protein Regulator
  GQY29_RS05320 (GQY29_05320) pptB 984803..985840 (+) 1038 WP_023909891.1 ABC transporter permease Regulator
  GQY29_RS05325 (GQY29_05325) - 985898..986689 (+) 792 WP_002951667.1 phosphotransferase family protein -
  GQY29_RS05330 (GQY29_05330) trmB 986699..987340 (+) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GQY29_RS05340 (GQY29_05340) - 987576..988757 (-) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26796.97 Da        Isoelectric Point: 4.4600

>NTDB_id=411397 GQY29_RS05315 WP_023909892.1 984075..984806(+) (pptA) [Streptococcus thermophilus strain EU01]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMAHADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQVLAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=411397 GQY29_RS05315 WP_023909892.1 984075..984806(+) (pptA) [Streptococcus thermophilus strain EU01]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTATGCCAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTACCGTCAAAAGATTGGCTACATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACTGTGCTTATGGCATATGGCCTTGATGTTAC
AGAAGGAATGGCACATGCAGACAAGTACCTCAAACTTTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGCGCCTTTATTGTCAACCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGTTTTGTGATTTTGCACCATGGACAGGTCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

99.177

100

0.992
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971

Multiple sequence alignment