Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   GQY29_RS00690 Genome accession   NZ_CP047191
Coordinates   139936..140379 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EU01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 134936..145379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQY29_RS00675 (GQY29_00675) - 135823..136194 (-) 372 WP_224103327.1 GNAT family acetyltransferase -
  GQY29_RS00680 (GQY29_00680) rcrQ 136350..138128 (-) 1779 WP_023909433.1 ABC transporter ATP-binding protein Regulator
  GQY29_RS00685 (GQY29_00685) rcrP 138118..139932 (-) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  GQY29_RS00690 (GQY29_00690) rcrR 139936..140379 (-) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  GQY29_RS00695 (GQY29_00695) - 140570..140980 (-) 411 WP_011680804.1 peptide deformylase -
  GQY29_RS00700 (GQY29_00700) gdhA 141238..142590 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  GQY29_RS00705 (GQY29_00705) - 142971..144146 (-) 1176 WP_159340901.1 IS256-like element IS1191 family transposase -
  GQY29_RS00710 (GQY29_00710) - 144255..145361 (+) 1107 WP_159340902.1 AAA family ATPase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=411365 GQY29_RS00690 WP_002945408.1 139936..140379(-) (rcrR) [Streptococcus thermophilus strain EU01]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=411365 GQY29_RS00690 WP_002945408.1 139936..140379(-) (rcrR) [Streptococcus thermophilus strain EU01]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment