Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   VAA_RS05390 Genome accession   NC_015633
Coordinates   1135266..1138628 (+) Length   1120 a.a.
NCBI ID   WP_013856355.1    Uniprot ID   -
Organism   Vibrio anguillarum 775     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1130266..1143628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA_RS05365 (VAA_03408) sucC 1130460..1131626 (+) 1167 WP_013856351.1 ADP-forming succinate--CoA ligase subunit beta -
  VAA_RS05370 (VAA_03407) sucD 1131626..1132498 (+) 873 WP_013856352.1 succinate--CoA ligase subunit alpha -
  VAA_RS05375 (VAA_03406) znuB 1132576..1133355 (-) 780 WP_013856353.1 zinc ABC transporter permease subunit ZnuB -
  VAA_RS05380 (VAA_03405) znuC 1133348..1134130 (-) 783 WP_013856354.1 zinc ABC transporter ATP-binding protein ZnuC -
  VAA_RS05385 znuA 1134215..1135093 (+) 879 WP_017045228.1 zinc ABC transporter substrate-binding protein ZnuA -
  VAA_RS05390 (VAA_03402) tfoS 1135266..1138628 (+) 3363 WP_013856355.1 AraC family transcriptional regulator Regulator
  VAA_RS05395 (VAA_03400) - 1139424..1139651 (+) 228 WP_013856356.1 ferrous iron transport protein A -
  VAA_RS05400 (VAA_03399) feoB 1139651..1141924 (+) 2274 WP_013856357.1 Fe(2+) transporter permease subunit FeoB -
  VAA_RS05405 (VAA_03398) - 1141921..1142151 (+) 231 WP_013856358.1 FeoC-like transcriptional regulator -
  VAA_RS05410 (VAA_03397) - 1142264..1142692 (-) 429 WP_013856359.1 HIT family protein -

Sequence

Protein


Download         Length: 1120 a.a.        Molecular weight: 127942.70 Da        Isoelectric Point: 6.8288

>NTDB_id=41136 VAA_RS05390 WP_013856355.1 1135266..1138628(+) (tfoS) [Vibrio anguillarum 775]
MKGKNDYFKPLLWILGFLTLLLAQGTQALDKAPSIFYPLPAQAQGKIFAAQNLFLGEEGGIWIHDVHGKVVFFDGQNILP
RRGSVLSQESENITYLNNAFWTFIDNELYRTYPAQDRELVFSLTPGIIIKKIGSSGNFIWLADETHFYTYHAQTHKLVTY
SFKEMYQLNQASRLIVNDAKFVLSKWVLATNAGVYLSDGESFSHVLSSGKNFIEKLYFSEKRRELVIGTLNGGLIIDVED
PKRQQKLVGDSHVLSVAETDQEYWIGTEDGLFVHSFLTGKTVKLESNDQDNNGLPGNKIYSLVNDLQGGIWIATDKGIRY
FSLFGQKFKRHSIAQLNNNPITKIVTRSDNKGYFFLTRQGLYQVDAEDWQEPKLIFPGEVHDVAQIDDHSLWIATHTGIV
IYHLQTKKMIETSVLPLKLRSNDTKHLEFDHEGLLWGATGNHLWSYQLADNSLTDFGSEWFVDAFLPAKIIKLKSTRRGV
FIGTDHGVYLFDKGKIVFLRATSHYGQSIDIFESSKGDVWFASAYGVFVLAHDRSDIRSIDMVEENISPKCLTETGNGIW
LTSSQGISLYNPMGEMVKHFGDPHGLMNNEFKSGVCESSIINNQQQLLLGSRFGLVTAWSSELTVATPPNTNIIFSQVNV
DHIPVMFGRGRFQTLELEYGSSISFLFGALPESRALSLEYRIAGDKEWQRLESAQLTLDHLLPGHYRLLVRNYSPNPQNS
MINSLSFVVDNPWYWSSWAIVLYLCLSIGLIAFASWWRSRWVTKVNRKLKAQVALKTDQLRHQSKIVLTNNQQLRKQLQI
RHIVVEQMLDSITPTLNQLIYRSQLHQLARLESLALKVKRELALLRNVRNDKTATQLLYDLSIILNSCVDGWREEFAKAN
ISLAVNNELKQAYIESAHFNLDIIFNTLLSDAVKRLYRNQELQIHCYEREKRLFIVMIDCGDQVQSINSDKRISGFELEE
MQLLVQRSGGEIHIFSSPERNLVELSWPSVELVSDAPEMIVVEEHSEDKFIDVTEKEWLKKVEKLVHNHYSDPEFSTSSA
AKSLFVSERSLQRRFKAITNKTFKEYLNEIRLEKACQYLLAGGKVAQVAFDCGFNDPSYFSQRFKHHFGLSPTQFVDDNE

Nucleotide


Download         Length: 3363 bp        

>NTDB_id=41136 VAA_RS05390 WP_013856355.1 1135266..1138628(+) (tfoS) [Vibrio anguillarum 775]
TTGAAAGGAAAGAACGACTATTTTAAACCTTTGCTCTGGATCTTGGGTTTTCTGACGCTTTTATTAGCGCAGGGGACACA
AGCTCTAGACAAAGCACCTTCCATCTTCTATCCATTGCCAGCTCAGGCTCAAGGGAAAATTTTTGCCGCACAAAATTTGT
TTTTAGGTGAAGAAGGGGGAATTTGGATACACGATGTGCATGGCAAAGTGGTTTTCTTTGATGGACAAAACATCCTTCCC
CGGCGTGGCTCAGTGCTTTCACAAGAGAGCGAAAATATTACCTATCTTAATAACGCTTTTTGGACGTTCATTGATAATGA
ACTTTATCGAACTTATCCCGCACAAGATCGCGAATTAGTATTTAGCTTAACGCCTGGAATCATCATAAAAAAAATAGGTT
CGTCAGGTAATTTCATCTGGTTAGCCGATGAGACGCACTTTTATACATACCATGCGCAAACCCACAAGTTAGTTACTTAT
TCTTTTAAAGAAATGTATCAATTAAATCAAGCTAGTCGATTGATCGTTAATGATGCGAAGTTTGTGCTTTCTAAATGGGT
ATTAGCCACTAATGCTGGAGTCTATCTGTCAGATGGAGAGAGTTTTTCTCACGTGCTCAGCTCTGGTAAAAACTTCATTG
AGAAACTCTATTTTTCCGAGAAACGCAGAGAACTTGTGATTGGAACGCTCAATGGTGGGCTGATTATTGATGTCGAGGAC
CCAAAGCGCCAACAAAAGTTGGTTGGAGATTCCCATGTATTATCTGTTGCTGAGACAGATCAAGAATATTGGATTGGTAC
TGAAGATGGATTATTTGTTCATTCGTTTTTGACAGGTAAAACCGTCAAGTTAGAAAGTAATGACCAAGACAATAATGGGT
TACCAGGCAATAAAATTTATTCATTGGTCAATGACTTACAAGGTGGGATTTGGATCGCAACGGATAAAGGTATTCGTTAC
TTTTCTCTGTTTGGACAAAAATTTAAGCGCCATTCCATTGCACAGCTCAACAATAATCCCATAACAAAAATTGTGACAAG
GTCAGATAATAAAGGGTATTTTTTTTTAACTCGACAAGGGTTGTACCAAGTCGATGCTGAAGATTGGCAAGAGCCTAAAC
TTATTTTCCCTGGAGAAGTGCATGATGTCGCTCAAATAGATGATCATTCTCTATGGATAGCTACACATACAGGCATCGTT
ATTTATCACTTGCAGACAAAAAAGATGATAGAAACGAGCGTTTTACCTCTGAAGCTGCGTTCGAATGATACTAAACATCT
TGAATTTGATCATGAAGGACTGTTGTGGGGAGCAACAGGTAACCATTTGTGGTCATATCAGTTGGCCGATAACTCGCTAA
CCGATTTCGGTTCTGAATGGTTTGTTGATGCATTTTTGCCTGCAAAAATAATAAAACTTAAGTCAACTCGGCGAGGGGTA
TTTATCGGCACTGACCATGGTGTTTATCTTTTTGACAAAGGCAAAATTGTTTTTCTCCGAGCGACTAGTCATTATGGACA
AAGCATTGATATATTTGAGAGTAGCAAGGGCGATGTTTGGTTTGCTAGTGCTTATGGCGTCTTTGTTTTGGCACATGATC
GTAGTGATATTCGATCTATTGATATGGTTGAAGAGAATATTAGCCCCAAATGTTTAACTGAAACGGGCAACGGTATTTGG
CTGACTTCCTCACAAGGAATCTCGCTCTACAATCCTATGGGTGAGATGGTAAAGCATTTTGGTGATCCACACGGATTGAT
GAATAATGAATTTAAAAGTGGAGTTTGCGAATCAAGTATTATCAATAACCAACAGCAGTTGCTGCTAGGTTCCCGTTTTG
GCTTAGTGACAGCATGGTCCTCTGAACTCACGGTTGCTACCCCTCCTAATACCAATATTATCTTTAGCCAAGTGAATGTC
GATCACATTCCTGTCATGTTCGGTCGTGGTCGTTTTCAGACACTAGAACTGGAATATGGAAGTTCGATAAGCTTTTTGTT
TGGTGCATTGCCAGAATCGAGAGCCTTATCATTGGAGTATCGTATTGCAGGGGATAAGGAGTGGCAGAGATTAGAAAGCG
CTCAGTTGACACTTGATCACCTATTACCTGGACACTATCGTTTGCTAGTGAGAAATTACAGTCCAAATCCGCAAAACAGT
ATGATAAACAGTCTATCATTTGTTGTGGATAACCCGTGGTATTGGTCTTCATGGGCTATTGTTCTTTACCTTTGCCTTTC
TATAGGCCTTATTGCTTTTGCTTCATGGTGGCGTTCTCGTTGGGTTACCAAAGTAAACCGAAAGTTAAAAGCTCAGGTGG
CCTTGAAAACGGATCAACTACGGCATCAAAGCAAAATTGTTTTGACTAATAACCAGCAGTTGCGCAAGCAATTACAAATT
CGCCATATCGTTGTTGAACAGATGTTAGATTCTATTACTCCTACATTAAATCAGCTGATTTATCGCTCCCAACTCCATCA
ACTCGCGCGACTTGAGTCTTTAGCTTTAAAAGTAAAACGTGAACTGGCGTTACTTCGTAACGTAAGAAATGATAAAACAG
CGACTCAGTTGCTCTACGACCTATCGATAATCTTGAACTCTTGTGTGGACGGATGGCGTGAAGAGTTCGCGAAAGCGAAT
ATTTCGTTGGCGGTGAACAATGAGCTTAAACAAGCTTATATTGAATCTGCCCATTTTAACCTAGACATCATTTTCAATAC
GCTACTGTCTGATGCGGTAAAACGTCTTTACAGAAATCAAGAGCTACAAATTCATTGTTATGAAAGGGAGAAAAGACTGT
TTATTGTGATGATTGACTGTGGCGATCAGGTGCAGTCTATCAATAGTGATAAGCGTATCTCTGGTTTTGAACTAGAGGAA
ATGCAACTGTTAGTACAGCGCAGTGGTGGGGAAATACATATTTTTTCATCGCCAGAACGAAATTTAGTTGAGCTTTCTTG
GCCATCAGTTGAGCTTGTGAGTGATGCACCTGAAATGATCGTCGTAGAGGAGCATTCAGAGGACAAGTTTATTGATGTAA
CGGAAAAAGAGTGGCTTAAAAAAGTCGAAAAATTGGTACACAATCACTATTCAGATCCTGAATTTAGTACCTCTAGTGCG
GCCAAATCACTCTTCGTATCGGAGCGTAGTTTGCAGCGTCGTTTTAAAGCGATCACCAATAAAACATTCAAAGAGTATCT
AAATGAGATCCGCTTAGAGAAAGCGTGCCAATATTTGCTCGCAGGAGGAAAAGTCGCCCAAGTCGCTTTTGATTGTGGGT
TTAATGATCCGTCTTATTTCAGCCAAAGATTTAAACATCACTTCGGTTTATCGCCAACCCAATTTGTTGATGATAACGAG
TAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1041-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

49.157

100

0.495

Multiple sequence alignment