Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   EC042_RS15710 Genome accession   NC_017626
Coordinates   3127018..3128010 (-) Length   330 a.a.
NCBI ID   WP_000081564.1    Uniprot ID   -
Organism   Escherichia coli 042     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3122018..3133010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC042_RS15680 (EC042_2929) - 3122490..3123353 (+) 864 WP_001223109.1 tetratricopeptide repeat protein -
  EC042_RS15685 (EC042_2930) pphB 3123378..3124034 (+) 657 WP_001139308.1 protein-serine/threonine phosphatase -
  EC042_RS15690 (EC042_2931) - 3124076..3124312 (-) 237 WP_000562983.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  EC042_RS15695 (EC042_2932) - 3124323..3125750 (-) 1428 WP_000863186.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  EC042_RS15700 (EC042_2933) - 3125750..3126343 (-) 594 WP_001237176.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  EC042_RS15705 (EC042_2934) - 3126490..3126897 (+) 408 WP_001208076.1 MarR family transcriptional regulator -
  EC042_RS15710 (EC042_2935) rpoS 3127018..3128010 (-) 993 WP_000081564.1 RNA polymerase sigma factor RpoS Regulator
  EC042_RS15715 (EC042_2936) nlpD 3128073..3129212 (-) 1140 WP_001272592.1 murein hydrolase activator NlpD -
  EC042_RS15720 (EC042_2937) pcm 3129352..3129978 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  EC042_RS15725 (EC042_2938) surE 3129972..3130733 (-) 762 WP_001305779.1 5'/3'-nucleotidase SurE -
  EC042_RS15730 (EC042_2939) truD 3130714..3131763 (-) 1050 WP_000568953.1 tRNA pseudouridine(13) synthase TruD -
  EC042_RS15735 (EC042_2940) ispF 3131760..3132239 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  EC042_RS15740 (EC042_2941) ispD 3132239..3132949 (-) 711 WP_000246141.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37946.76 Da        Isoelectric Point: 4.5597

>NTDB_id=41135 EC042_RS15710 WP_000081564.1 3127018..3128010(-) (rpoS) [Escherichia coli 042]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEESAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=41135 EC042_RS15710 WP_000081564.1 3127018..3128010(-) (rpoS) [Escherichia coli 042]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGAGCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

72.755

97.879

0.712

Multiple sequence alignment