Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   VAA_RS02720 Genome accession   NC_015633
Coordinates   589283..589804 (+) Length   173 a.a.
NCBI ID   WP_013855888.1    Uniprot ID   -
Organism   Vibrio anguillarum 775     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 584283..594804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA_RS02700 (VAA_02627) - 584460..586958 (-) 2499 WP_013855884.1 penicillin-binding protein 1A -
  VAA_RS02705 (VAA_02628) pilM 587108..588118 (+) 1011 WP_013855885.1 type IV pilus assembly protein PilM Machinery gene
  VAA_RS02710 (VAA_02629) pilN 588108..588710 (+) 603 WP_013855886.1 PilN domain-containing protein Machinery gene
  VAA_RS02715 (VAA_02630) pilO 588703..589296 (+) 594 WP_013855887.1 type 4a pilus biogenesis protein PilO Machinery gene
  VAA_RS02720 (VAA_02631) pilP 589283..589804 (+) 522 WP_013855888.1 pilus assembly protein PilP Machinery gene
  VAA_RS02725 (VAA_02632) pilQ 589828..591543 (+) 1716 WP_013855889.1 type IV pilus secretin PilQ Machinery gene
  VAA_RS02730 (VAA_02633) aroK 591730..592251 (+) 522 WP_010317691.1 shikimate kinase AroK -
  VAA_RS02735 (VAA_02634) aroB 592276..593364 (+) 1089 WP_026027894.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19203.29 Da        Isoelectric Point: 10.2262

>NTDB_id=41133 VAA_RS02720 WP_013855888.1 589283..589804(+) (pilP) [Vibrio anguillarum 775]
MKNNNLLLMVLFSTSVLVGCKANQDSLKVYVEQVEGQARKEVSKLKPIIQFEVAHYAQHESREPFVLPKEAIVQNQPVVK
ADCWQPPARSKNGQLERYPLNQLRLKGVMSSGGAVSALVQTPQGKVVNVKAGQYLGLNHGKVTRVNSNYLLINETLPDGL
GCWNQRNVKLALK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=41133 VAA_RS02720 WP_013855888.1 589283..589804(+) (pilP) [Vibrio anguillarum 775]
ATGAAAAACAATAATCTGCTGCTGATGGTGTTGTTTAGTACCAGTGTATTGGTTGGTTGTAAGGCGAATCAAGATTCATT
GAAGGTTTATGTGGAGCAGGTCGAGGGGCAAGCACGCAAAGAAGTCTCCAAATTAAAACCCATTATTCAATTTGAAGTTG
CTCATTATGCGCAACATGAATCCCGCGAACCTTTTGTGCTGCCTAAAGAAGCGATTGTACAAAATCAGCCTGTAGTGAAG
GCAGACTGCTGGCAACCTCCGGCTCGCAGTAAAAATGGCCAGCTAGAGCGCTATCCGCTTAATCAACTGCGATTAAAAGG
CGTGATGAGTAGCGGGGGCGCGGTATCGGCATTAGTGCAAACGCCCCAAGGCAAGGTCGTCAACGTGAAAGCGGGACAAT
ATTTAGGTTTGAATCACGGCAAAGTTACTCGAGTTAATTCCAATTACCTGCTGATCAATGAAACCTTGCCAGACGGCTTA
GGTTGTTGGAATCAACGTAACGTCAAATTGGCTCTGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

76.301

100

0.763
  pilP Vibrio campbellii strain DS40M4

56.647

100

0.566

Multiple sequence alignment