Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H4J01_RS09640 Genome accession   NZ_CP059840
Coordinates   1958640..1960067 (-) Length   475 a.a.
NCBI ID   WP_000980559.1    Uniprot ID   B7UT49
Organism   Escherichia coli strain E2348/69     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1953640..1965067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4J01_RS09605 hisL 1954224..1954274 (-) 51 WP_001364200.1 his operon leader peptide -
  H4J01_RS09610 yefM 1954557..1954808 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  H4J01_RS09615 yoeB 1954805..1955059 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  H4J01_RS09620 yeeZ 1955142..1955966 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  H4J01_RS09625 yeeY 1956012..1956941 (+) 930 WP_000803379.1 LysR substrate-binding domain-containing protein -
  H4J01_RS09630 yoeI 1957156..1957218 (+) 63 WP_010723108.1 membrane protein YoeI -
  H4J01_RS09635 plaP 1957208..1958566 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  H4J01_RS09640 sbcB 1958640..1960067 (-) 1428 WP_000980559.1 exodeoxyribonuclease I Machinery gene
  H4J01_RS09645 dacD 1960276..1961442 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H4J01_RS09650 sbmC 1961561..1961992 (+) 432 WP_001105371.1 DNA gyrase inhibitor SbmC -
  H4J01_RS09655 yeeA 1962232..1963290 (+) 1059 WP_001200890.1 FUSC family protein -
  H4J01_RS09660 tmaR 1963462..1963791 (+) 330 WP_000450409.1 DUF496 family protein -
  H4J01_RS09665 - 1963892..1964335 (-) 444 WP_001189429.1 EutP/PduV family microcompartment system protein -
  H4J01_RS09670 pduU 1964340..1964690 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54469.76 Da        Isoelectric Point: 5.4720

>NTDB_id=411301 H4J01_RS09640 WP_000980559.1 1958640..1960067(-) (sbcB) [Escherichia coli strain E2348/69]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=411301 H4J01_RS09640 WP_000980559.1 1958640..1960067(-) (sbcB) [Escherichia coli strain E2348/69]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAAAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583