Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   VAA_RS02510 Genome accession   NC_015633
Coordinates   547019..548026 (+) Length   335 a.a.
NCBI ID   WP_013855849.1    Uniprot ID   A0AAW4B9N4
Organism   Vibrio anguillarum 775     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 542019..553026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA_RS02490 (VAA_02583) metJ 542070..542396 (+) 327 WP_010318342.1 met regulon transcriptional regulator MetJ -
  VAA_RS02495 (VAA_02584) - 542545..543822 (-) 1278 WP_026027888.1 malic enzyme-like NAD(P)-binding protein -
  VAA_RS02500 (VAA_02585) rpmE 544028..544243 (-) 216 WP_010318344.1 50S ribosomal protein L31 -
  VAA_RS02505 (VAA_02586) priA 544512..546713 (+) 2202 WP_013855848.1 primosomal protein N' -
  VAA_RS02510 (VAA_02587) cytR 547019..548026 (+) 1008 WP_013855849.1 DNA-binding transcriptional regulator CytR Regulator
  VAA_RS02515 (VAA_02588) - 548129..548671 (+) 543 WP_013855850.1 SPOR domain-containing protein -
  VAA_RS02520 (VAA_02589) hslV 548792..549358 (+) 567 WP_010317615.1 ATP-dependent protease subunit HslV -
  VAA_RS02525 (VAA_02590) hslU 549394..550725 (+) 1332 WP_013855851.1 HslU--HslV peptidase ATPase subunit -
  VAA_RS02530 (VAA_02591) - 550848..551765 (+) 918 WP_013855852.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  VAA_RS02535 (VAA_02592) rraA 551842..552363 (+) 522 WP_026027418.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36797.43 Da        Isoelectric Point: 6.6397

>NTDB_id=41129 VAA_RS02510 WP_013855849.1 547019..548026(+) (cytR) [Vibrio anguillarum 775]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSLVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPAEATLCKFRHQGYQQALRRAGITMNPNYCTYGDFTFEAGAKALRQLLALSEPPTA
IFSHNDSMAIGVIKEAKKLGLRVPQDISVVGFDDIQFALYCDPPLTTISQPRYEIGRQAMLMMLDLLRGQEVGAGSRLLE
TKLVIRESAAPPRLN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=41129 VAA_RS02510 WP_013855849.1 547019..548026(+) (cytR) [Vibrio anguillarum 775]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGTGTATCAACCGCCACGGTATCTAGGGCGTTGATGAACCCTGAAAA
AGTATCATCTTCAACGCGAAAGCGTGTCGAAGATGCTGTTTTGGAAGCTGGTTACTCACCAAATTCTCTCGCTCGCAACT
TACGCCGTAATGAATCTAAAACCATTGTCGCTATCGTGCCTGATATTTGTGACCCTTACTTCACAGAGATCATTCGTGGT
ATCGAAGATGCGGCGATGGAACATGGTTATTTAGTACTGTTGGGTGATAGTGGTCAGCAGAAAAAGCGAGAAAGTTCGTT
AGTTAACCTCGTATTTACTAAGCAGGCCGATGGCATGTTGTTGCTGGGAACTGATTTGCCGTTTGATGTTAGTAAGCCGG
AGCAAAAAAACCTGCCACCTATGGTTATGGCATGTGAATTTGCGCCAGAACTTGAGTTGCCGACGGTACATATTGATAAC
CTTACTTCAGCGTTTGAAGCGGTGAACTATTTGACGCAGCTCGGGCACAAACGCATCGCGCAAATATCGGGGCCAGCAGA
GGCCACGCTGTGTAAGTTCCGCCATCAAGGTTATCAACAAGCTTTACGCCGCGCAGGAATTACCATGAACCCTAATTATT
GCACTTATGGTGATTTTACTTTTGAAGCCGGGGCTAAAGCACTGCGCCAATTATTGGCGTTATCTGAGCCACCCACAGCC
ATTTTTAGTCATAATGACAGTATGGCTATCGGTGTCATTAAAGAAGCCAAAAAATTGGGTTTGCGCGTTCCACAAGATAT
TTCAGTGGTGGGATTTGATGATATTCAATTTGCGCTCTACTGCGATCCACCGTTAACGACCATCTCACAGCCGCGCTATG
AGATAGGGCGTCAAGCGATGCTCATGATGCTCGATCTTCTTCGCGGTCAAGAGGTTGGCGCAGGTTCTCGACTATTAGAA
ACCAAGTTAGTGATTCGAGAAAGCGCAGCGCCTCCTCGTTTGAACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

92.169

99.104

0.913
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.403

0.869

Multiple sequence alignment