Detailed information NTG0411287

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H4J01_RS05210
• Genome accession: NZ_CP059840
• Coordinates: 1078590..1079582 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E2348/69
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1073590..1084582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4J01_RS05180	ispD	1073651..1074361 (+)	711	WP_000246147.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H4J01_RS05185	ispF	1074361..1074840 (+)	480	WP_001219250.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H4J01_RS05190	truD	1074837..1075886 (+)	1050	WP_000568966.1	tRNA pseudouridine(13) synthase TruD	-
H4J01_RS05195	surE	1075867..1076628 (+)	762	WP_001374596.1	5'/3'-nucleotidase SurE	-
H4J01_RS05200	pcm	1076622..1077248 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H4J01_RS05205	nlpD	1077433..1078527 (+)	1095	WP_309144619.1	murein hydrolase activator NlpD	-
H4J01_RS05210	rpoS	1078590..1079582 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H4J01_RS05215	-	1079702..1080109 (-)	408	WP_001208066.1	MarR family winged helix-turn-helix transcriptional regulator	-
H4J01_RS05220	-	1080256..1080849 (+)	594	WP_000767729.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
H4J01_RS05225	-	1080849..1082276 (+)	1428	WP_000863188.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
H4J01_RS05230	-	1082287..1082523 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
H4J01_RS05235	ygbN	1082562..1083926 (-)	1365	WP_000104437.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=411287 H4J01_RS05210 WP_000081550.1 1078590..1079582(+) (rpoS) [Escherichia coli strain E2348/69]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=411287 H4J01_RS05210 WP_000081550.1 1078590..1079582(+) (rpoS) [Escherichia coli strain E2348/69]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCTACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCTATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715